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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 00:00:49 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/tyrosinase.html
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#====================================
# Aligned_structures: 2
#   1: 1bt3a.pdb
#   2: 1js8a.pdb
#
# Length:        342
# Identity:       43/342 ( 12.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     43/342 ( 12.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          126/342 ( 36.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bt3a.pdb               1  MKVRPAAHTMDKDAIAKFAKAVELMKALPADDPRNFYQQALVHCAYCNGGYDQVNF-P-D   58
1js8a.pdb               1  AIIRKNVNSLTPSDIKELRDAMAKVQADT--SDNGYQKIASYHG--IPLSCHY---ENGT   53
                              R          I     A     A            A  H                 

1bt3a.pdb              59  QEI-QVHNSWLFFPFHRWYLYFYERILGKLIGDPSFGLPFWNWDNPGGM-VLPDFLNDS-  115
1js8a.pdb              54  AYACCQHGMVTFPNWHRLLTKQMEDALVAKG-S-HVGIPYWDWTTT--FANLPVLVTEEK  109
                                 H    F   HR      E  L         G P W W        LP       

1bt3a.pdb             116  TSSLYD---SNRNQ------SHLPPVVVDLGYNGADTDVTDQQRITDNLALMYKQMVTNA  166
1js8a.pdb             110  DNSFHHAHIDVA--NTDTTRSPRAQLF------------------SFFYRQIALA-LE--  146
                             S                 S                                       

1bt3a.pdb             167  G-TAELFLGKAYRAGDAPSPGA------GSIETSPHIPIHRWVGDPRNTN--NEDMGNFY  217
1js8a.pdb             147  QTDFCDFEI-------------QFEIGHNAIHSWVGG-------------SSPYGMSTLH  180
                                 F                       I                        M    

1bt3a.pdb             218  SAGRDIAFYCHHSNVDRMWTIWQQLARDY-----------TDSDWLNATFLFYDENGQAV  266
1js8a.pdb             181  YTSYDPLFYLHHSNTDRIWSVWQALQ---KYRGLPYNTANCEINKLVKPLK---------  228
                               D  FY HHSN DR W  WQ L                    L              

1bt3a.pdb             267  K---------------VRIGDSLDNQKMGYKYAKTPLPWL--  291
1js8a.pdb             229  -PFNLDTNPNAVTKAHSTGATSFDYHKLGYDYDNLNFH--GM  267
                                                S D  K GY Y          


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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