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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 04:20:59 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/transketolase_C.html
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#====================================
# Aligned_structures: 3
#   1: 1dtwb.pdb
#   2: 1qs0b.pdb
#   3: 1trka.pdb
#
# Length:        173
# Identity:        8/173 (  4.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     61/173 ( 35.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           66/173 ( 38.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1dtwb.pdb               1  ---------PYNIPLSQAEVIQEG--SDVTLVAWGTQVHVIREVASMAKEKLGVSCEVID   49
1qs0b.pdb               1  ---------YYTVPLDKAAITRPG--NDVSVLTYGTTVYVAQVAAEESG----VDAEVID   45
1trka.pdb               1  EGSSIESAS-----K-GGYVLQDVANPDIILVATGSEVSLSVEAAKTLAA-KNIKARVVS   53
                                         l  a v q g   Dv lva Gt V v  eaA        v aeVid

1dtwb.pdb              50  LRTII-----PWDVDTICKSVIKT-GRLLISHEAPLTGGFASEISSTVQEECFLNLEAPI  103
1qs0b.pdb              46  LRSLW-----PLDLDTIVESVKKT-GRCVVVHEATRTCGFGAELVSLVQEHCFHHLEAPI   99
1trka.pdb              54  LPDFFTFDKQ--PLEYRLSVLP-DNVPIMSVEVLATTC--WGKYA--------------H   94
                           Lr          dldti  sv  t gr   vhea  Tc    e                i

1dtwb.pdb             104  SRVCGYDTPFPHIFEPF----YIPDKWKCYDALRKMINY--------------  138
1qs0b.pdb             100  ERVTGWDTPYPHAQEWA----YFPGPSRVGAALKKVEV---------------  133
1trka.pdb              95  QSFGIDRFG-ASGKAPEVFKFFGFTPEGVAERAQKTIAFYKGDKLISPLKKAF  146
                            rv g dtp ph  ep     y p p  v  al K i                


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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