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# Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Aug 12 22:02:43 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/MUSTANG_HOMSTRAD/results/tim.html
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#====================================
# Aligned_structures: 10
# 1: 1amk.pdb
# 2: 1aw2a.pdb
# 3: 1htia.pdb
# 4: 1tcda.pdb
# 5: 1tima.pdb
# 6: 1trea.pdb
# 7: 1ydva.pdb
# 8: 1ypia.pdb
# 9: 2btma.pdb
# 10: 5tima.pdb
#
# Length: 260
# Identity: 45/260 ( 17.3%) (Calculated as the percentage of conserved columns in the alignment.)
# Similarity: 70/260 ( 26.9%) (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps: 17/260 ( 6.5%) (Calculated as the percentage of columns with atleast one gap.)
#===========================================ALIGNMENT START=========================================
1amk.pdb 1 SAKPQPIAAANWKCNGTTASIEKLVQVFNEHT-ISHDVQCVVAPTFVHIPLVQAKLR--N 57
1aw2a.pdb 1 ---RHPVVMGNWKLNGSKEMVVDLLNGLNAELEGVTGVDVAVAPPALFVDLAERTLTEAG 57
1htia.pdb 1 APSRKFFVGGNWKMNGRKQSLGELIGTLNAAK-VPADTEVVCAPPTAYIDFARQKLD--- 56
1tcda.pdb 1 --KPQPIAAANWKCNGSESLLVPLIETLNAAT-FDHDVQCVVAPTFLHIPMTKARLT--N 55
1tima.pdb 1 -APRKFFVGGNWKMNGKRKSLGELIHTLDGAK-LSADTEVVCGAPSIYLDFARQKLD--- 55
1trea.pdb 1 --MRHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAE--G 56
1ydva.pdb 1 ---RKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLLQ--- 54
1ypia.pdb 1 --ARTFFVGGNFKLNGSKQSIKEIVERLNTAS-IPENVEVVICPPATYLDYSVSLVK--K 55
2btma.pdb 1 ---RKPIIAGNWKMNGTLAEAVQFVEDVKGHVPPADEVISVVCAPFLFLDRLVQAAD--G 55
5tima.pdb 1 -SKPQPIAAANWKCNGSQQSLSELIDLFNSTS-INHDVQCVVASTFVHLAMTKERLS--H 56
NwK NG
1amk.pdb 58 PKYVISAENAI-AKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEA 116
1aw2a.pdb 58 SAIILGAQNTDLNNSGAFTGDMSPAMLKEFGATHIIIGHSERREYHAESDEFVAKKFAFL 117
1htia.pdb 57 PKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHA 116
1tcda.pdb 56 PKFQIAAQNAI-TRSGAFTGEVSLQILKDYGISWVVLGHSERRLYYGETNEIVAEKVAQA 114
1tima.pdb 56 AKIGVAAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHA 115
1trea.pdb 57 SHIMLGAQNVNLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVL 116
1ydva.pdb 55 SKFSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQAS 114
1ypia.pdb 56 PQVTVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRSYFHEDDKFIADKTKFA 115
2btma.pdb 56 TDLKIGAQTMHFADQGAYTGEVSPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAA 115
5tima.pdb 57 PKFVIAAQNAI-AKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAA 115
aqn Ga TGe S Kd g GHsERR E e K
1amk.pdb 117 CKQGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGK 176
1aw2a.pdb 118 KENGLTPVLCIGESDAQNEAGETMAVCARQLDAVINTQGVEALEGAIIAYEPIWAIGTGK 177
1htia.pdb 117 LAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVK--DWSKVVLAYEPVWAIGTGK 174
1tcda.pdb 115 CAAGFHVIVCVGETNEEREAGRTAAVVLTQLAAVAQKLSKEAWSRVVIAYEPVWAIGTGK 174
1tima.pdb 116 LAEGLGVIACIGEKLDEREAGITEKVVFQETKAIADNVK--DWSKVVLAYEPVWAIGTGK 173
1trea.pdb 117 KEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGK 176
1ydva.pdb 115 LKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLID--NFDNVILVYEPLWAIGTGK 172
1ypia.pdb 116 LGQGVGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVK--DWTNVVVAYEPVWAIGTGL 173
2btma.pdb 116 FTRGLIPIICCGESLEEREAGQTNAVVASQVEKALAGLTPEQVKQAVIAYEPIWAIGTGK 175
5tima.pdb 116 VASGFMVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGK 175
g C GE e T V q aYEP WAIGTGk
1amk.pdb 177 VATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGA 236
1aw2a.pdb 178 AATAEDAQRIHAQIRAHIAEK-SEAVAKNVVIQYGGSVKPENAAAYFAQPDIDGALVGGA 236
1htia.pdb 175 TATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGA 234
1tcda.pdb 175 VATPQQAQEVHELLRRWVRSKLGTDIAAQLRILYGGSVTAKNARTLYQMRDINGFLVGGA 234
1tima.pdb 174 TATPQQAQEVHEKLRGWLKTHVSDAVAVQSRIIYGGSVTGGNCKELASQHDVDGFLVGGA 233
1trea.pdb 177 SATPAQAQAVHKFIRDHIAKV-DANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGA 235
1ydva.pdb 173 TATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNA 232
1ypia.pdb 174 AATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGA 233
2btma.pdb 176 SSTPEDANSVCGHIRSVVSRLFGPEAAEAIRIQYGGSVKPDNIRDFLAQQQIDGALVGGA 235
5tima.pdb 176 VATPQQAQEAHALIRSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGA 235
aTp Aq h R A I YGGSv n d G LVGgA
1amk.pdb 237 SLKPEFRDIIDAT-R----- 250
1aw2a.pdb 237 ALDAKSFAAIAKAAAEAKA- 255
1htia.pdb 235 SLKPEFVDIINAK-Q----- 248
1tcda.pdb 235 SLKPEFVEIIEAT-K----- 248
1tima.pdb 234 SLKPEFVDIINAK-H----- 247
1trea.pdb 236 SLKADAFAVIVKAAEAAKQA 255
1ydva.pdb 233 SLKESFVDIIKSA-M----- 246
1ypia.pdb 234 SLKPEFVDIINSR-N----- 247
2btma.pdb 236 SLEPASFLQLVEAGR----- 250
5tima.pdb 236 SLKPEFVDIIKAT-Q----- 249
sL i
#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue = Acidic,{D,E}
# Magenta = Basic,{K,R} and
# Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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