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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 16:52:17 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/thiored.html
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#====================================
# Aligned_structures: 6
#   1: 1aaza.pdb
#   2: 1ego.pdb
#   3: 1thx.pdb
#   4: 2trxa.pdb
#   5: 3grx.pdb
#   6: 3trx.pdb
#
# Length:        156
# Identity:        2/156 (  1.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:      4/156 (  2.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          103/156 ( 66.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1aaza.pdb               1  --------------------------MFKVYGYD----SNIHKCVYCDNAKRLLTVKK--   28
1ego.pdb                1  -------------------------MQTVIFGR-SGCP-------YCVRAKDLAEKLSNE   27
1thx.pdb                1  SK--GVITI-TDAEFESEVLKA-EQPVLVYFWA-----S---WCGPCQLMSPLINLAANT   48
2trxa.pdb               1  --SDKIIHL-TDDSFDTDVLKA-DGAILVDFWA-----E---WCGPCKMIAPILDEIADE   48
3grx.pdb                1  -------------------------ANVEIYTK-----E---TCPYSHRAKALLSSKG--   25
3trx.pdb                1  ----MVKQIESKTAFQEALDAAGDKLVVVDFSA-----T---WCGPCKMIKPFFHSLSEK   48
                                                                         c             

1aaza.pdb              29  ----QPFEFINIMPEKGVFDD-----------------EKIAELLTKLGRDTQIG-LTMP   66
1ego.pdb               28  RD-DFQYQYVDIR-----AEGITKEDLQQKAGKPVETV---------------------P   60
1thx.pdb               49  YSDRLKVVKLEID-----PNP-----------------TTVKKYK----------VEGVP   76
2trxa.pdb              49  YQGKLTVAKLNID-----QNP-----------------GTAPKYG----------IRGIP   76
3grx.pdb               26  ----VSFQELPID-----GNA-----------------AKREEMIKRS-G-----RTTVP   53
3trx.pdb               49  YS-NVIFLEVDVD-----DCQ-----------------DVASECE----------VKCTP   75
                                      i                                               P

1aaza.pdb              67  QVFAPD----GSHIGGFD----QLR-EYFK------   87
1ego.pdb               61  QIFVD-----QQHIGGYT----DFA-AWVKENLDA-   85
1thx.pdb               77  ALRLVKGEQILDSTEGVI-SKDKLL-SFLDTHL--N  108
2trxa.pdb              77  TLLLFKNGEVAATKVGAL-SKGQLK-EFLDANL--A  108
3grx.pdb               54  QIFID-----AQHIGGYDDLYALDARGGLDPLL--K   82
3trx.pdb               76  TFQFFKKGQKVGEFSGAN-K-EKLE-ATINELV---  105
                                          G                    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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