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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 09:25:41 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/sugbp.html
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#====================================
# Aligned_structures: 4
#   1: 1abe.pdb
#   2: 1gca.pdb
#   3: 1rpja.pdb
#   4: 2dri.pdb
#
# Length:        346
# Identity:       12/346 (  3.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     62/346 ( 17.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           87/346 ( 25.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1abe.pdb                1  ---NLKLGFLVKQPEEPWFQTEWKFADKAGKDLG-FEVIKIAV-P--DGEKTLNAIDSLA   53
1gca.pdb                1  --ADTRIGVTIYKYDDNFMSVVRKAIEKDGKSAPDVQLLMNDS-QN-DQSKQNDQIDVLL   56
1rpja.pdb               1  AA---EYAVVLKTLSNPFWVDMKKGIEDEAKTLG-VSVDIFASPSEGDFQSQLQLFEDLS   56
2dri.pdb                1  ---KDTIALVVSTLNNPFFVSLKDGAQKEADKLG-YNLVVLDS-QN-NPAKELANVQDLT   54
                                           pf     k   k  k lg        s    d  k l     L 

1abe.pdb               54  ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV-N---AKGKPMDT--VPLVMM  107
1gca.pdb               57  AKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPS-RKALDSY-----DKAYYVGT  110
1rpja.pdb              57  NKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDMDNLKKAGG--NV--EAFVTT  112
2dri.pdb               55  VRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT-K-G-------EV--VSHIAS  103
                             g K   i   d       v  A      v   d                      v  

1abe.pdb              108  AATKIGERQGQELYKEMQ--KRGWDV-----KE-SAVMAIT-ANELDTARRRTTGSMDAL  158
1gca.pdb              111  DSKESGVIQGDLIAKHWQ--ANQG--WDLNKDGKIQYVLLKGEPGHPDAEARTTYVVKEL  166
1rpja.pdb             113  DNVAVGAKGASFIIDKLG-A------------EGGEVAIIEGKAGNASGEARRNGATEAF  159
2dri.pdb              104  DNVLGGKIAGDYIAKKAGE--------------GAKVIELQGIAGTSAARERGEGFQQAV  149
                           d    G   g  i k                     v       g   a  R  g   a 

1abe.pdb              159  KA-A-G-FPEKQIYQVPTKSNDIPGAFDAANSMLVQ-HP-EVKHWLIVGMNDSTVLGGVR  213
1gca.pdb              167  NDKGIQ-TE-Q-LALDT-AMWDTAQAKDKMDAWLSGPNANKI--EVVIANNDAMAMGAVE  220
1rpja.pdb             160  KK-A-SQIK-L-VASQP-ADWDRIKALDVATNVLQR-NP-NI--KAIYCANDTMAMGVAQ  210
2dri.pdb              150  AA-H-K-FN-V-LASQP-ADFDRIKGLNVMQNLLTA-HP-DV--QAVFAQNDEMALGALR  199
                                        a  p a  D   a d     L    p           ND ma G   

1abe.pdb              214  ATEGQGFKAADIIGIGINGV-DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAK  272
1gca.pdb              221  ALKAHNKS--SIPVFGVDALPEALALVKS--G-AMAGTVLNDANNQAKATFDLAKNLAEG  275
1rpja.pdb             211  AVANAGKT-GKVLVVGTDGIPEARKMVEA--G-QMTATVAQNPADIGATGLKLMVDAEKS  266
2dri.pdb              200  ALQTAGKS--DVMVVGFDGTPDGEKAVND--G-KLAATIAQLPDQIGAKGVETADKVLKG  254
                           A    gk      v G dg   a   v    g     t    p   g             

1abe.pdb              273  DVEP---P--K------FTEVTDVVLITRDNFKEELEKKGLGGK--  305
1gca.pdb              276  -KGA---ADGTSWKIENKIVRVPYVGVDKDNLSEFT--------QK  309
1rpja.pdb             267  GKVIPLD-KAP------EFKLVDSILVTQ-----------------  288
2dri.pdb              255  -EKV---Q---------AKYPVDLKLVVKQ----------------  271
                                                vd  lv                   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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