################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:55:53 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/rasgap.html
################################################################################################
#====================================
# Aligned_structures: 2
#   1: 1nf1a.pdb
#   2: 1wer.pdb
#
# Length:        329
# Identity:       70/329 ( 21.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     70/329 ( 21.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           75/329 ( 22.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1nf1a.pdb               1  -E-RLVELVTMMGDQGELPIAMALANVVPCSQWDELARVLVTLFDSRHLLYQLLWNMFSK   58
1wer.pdb                1  MPEEEYSEFKELILQKELHVVYALSHV-CGQDRTLLASILLRIFLHEKLESLLLCTLNDR   59
                                         Q EL    AL  V        LA  L   F    L   LL      

1nf1a.pdb              59  EVELADSMQTLFRGNSLASKIMTFCFKVYGATYLQKLLDPL-------------------   99
1wer.pdb               60  EISMEDEATTLFRATTLASTLMEQYMKATATQFVHHALKDSILKIMESKQSCELSPSKLE  119
                           E    D   TLFR   LAS  M    K          L                      

1nf1a.pdb             100  ---SLEENQRNLLQMTEKFFHAIISSSSEFPPQLRSVCHCLYQVVSQRFPQN---SIGAV  153
1wer.pdb              120  KNEDVNTNLTHLLNILSELVEKIFMASEILPPTLRYIYGCLQKSVQHKWPTNTTMRTRVV  179
                                  N   LL         I   S   PP LR    CL   V    P N       V

1nf1a.pdb             154  GSAMFLRFINPAIVSPYEA--------PIIERGLKLMSKILQSIANHVLFT-KEEHMRPF  204
1wer.pdb              180  SGFVFLRLICPAILNPRMFNIISDSPSPIAARTLILVAKSVQNLANLVEFGAKEPYMEGV  239
                               FLR I PAI  P           PI  R L L  K  Q  AN V F  KE  M   

1nf1a.pdb             205  NDFVKSNFDAARRFFLDIASA----------------------LRLLWNNQEKIGQYLSS  242
1wer.pdb              240  NPFIKSNKHRMIMFLDELGN-VPELPDTTEHSRTDLSRDLAALHEICVAHSDELRTLSNE  298
                           N F KSN      F                                              

1nf1a.pdb             243  -----RPFDKMATLLAYLGPPE-------  259
1wer.pdb              299  RGAQQHVLKKLLAITELLQ---QKQNQYT  324
                                    K       L           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################