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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:42:30 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/prenyltrans.html
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#====================================
# Aligned_structures: 2
#   1: 1ft1b.pdb
#   2: 2sqca.pdb
#
# Length:        532
# Identity:       38/532 (  7.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     38/532 (  7.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          296/532 ( 55.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ft1b.pdb               1  PLYSLRPEHARERLQDDSVETVTSIEQAKVEEKIQEVFSSYK----FNHLVPRLVLQ---   53
2sqca.pdb               1  -------------------APAYARTLDRAVEYLLSCQK---DEGYWWGPLIS----PVW   34
                                                          E                            

1ft1b.pdb              54  -----------------REKHFHYLKRGLRQLTDAYECLDASRPWLCYWIL-----HSLE   91
2sqca.pdb              35  DTGLAVLALRAAGLPADHDRLVKAGEWLLDR--------------------QITVPGDWA   74
                                                       L                               

1ft1b.pdb              92  LLD---------------EPI----------------------PQIVATDVCQFLELCQS  114
2sqca.pdb              75  VKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQS  134
                                                                           T         QS

1ft1b.pdb             115  PDGGFGGGPG-------------------QYPHLAPTYAAVNALCIIGTEEAYNVI----  151
2sqca.pdb             135  SNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGY-------DDAW  187
                             GG G                         P    T          G            

1ft1b.pdb             152  -NREKLLQYLYSLKQPDGSFLMHVGG-EV-DVRSAYCAASVASLTNII--TPDLFEGTAE  206
2sqca.pdb             188  KVIRRAVEYLKREQKPDGSWFGR---WGVNYLYGTGAVVSALKAVGIDTREPYI-QKALD  243
                                   YL     PDGS         V          S      I    P        

1ft1b.pdb             207  WIARCQNWEGGIGGV-----------PGMEAHGGYTFCGLAALVILKKERSL-NLKSLLQ  254
2sqca.pdb             244  WVEQHQNPDGGWGE-DCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAE-SEAARRGVQ  301
                           W    QN  GG G                      T   L AL                Q

1ft1b.pdb             255  WVTSRQMRFEGGFQGR-------CN-K-LV-DGCYSFWQAGLLPLLHRALHAQGDPALSM  304
2sqca.pdb             302  YLVETQRPD-GGWDEPYYTGTGFPGDFYLGYTMYRHVFPTLALGRYKQAIER--------  352
                                Q    GG                L             L     A           

1ft1b.pdb             305  SHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFGSGAMLHDV  364
2sqca.pdb                  ------------------------------------------------------------     
                                                                                       

1ft1b.pdb             365  VMGVPENVLQPTHPVYNIGPDKVIQATTHFLQKPVPGFEECEDAVTSDPATD  416
2sqca.pdb                  ----------------------------------------------------     
                                                                               


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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