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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 12:02:24 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/plantltp.html
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#====================================
# Aligned_structures: 5
#   1: 1bwoa.pdb
#   2: 1hyp.pdb
#   3: 1lip.pdb
#   4: 1mzm.pdb
#   5: 1rzl.pdb
#
# Length:        107
# Identity:        7/107 (  6.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     34/107 ( 31.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           46/107 ( 43.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bwoa.pdb               1  -IDCG----HVDSLVRPCLSYVQGGP-GPSG--QCCDGVKNLHNQARSQSDRQSACNCLK   52
1hyp.pdb                1  -----PSCPDLSICLNILGG-----------SLGTVDDCCALIGGL----GDIEAIVCLC   40
1lip.pdb                1  -LNCG----QVDSKMKPCLTYVQGGP-GPSG--ECCNGVRDLHNQAQSSGDRQTVCNCLK   52
1mzm.pdb                1  AISCG----QVASAIAPCISYARGQGSGPSA--GCCSGVRSLNNAARTTADRRAACNCLK   54
1rzl.pdb                1  -ITCG----QVNSAVGPCLTYARGGA-GPSA--ACCSGVRSLKAAASTTADRRTACNCLK   52
                                     v s   pc                cc gv  L   a    dr  acnCLk

1bwoa.pdb              53  GIARGIH--NLNEDNARSIPPKCGVNLPYTISL------NIDCSRV-   90
1hyp.pdb               41  IQLRALGILNL-NRNLQLILNS--CGRSYPSN--ATCPRT-------   75
1lip.pdb               53  GIARGIH--NLNLNNAASIPSKCNVNVPYTISPD------IDCSRIY   91
1mzm.pdb               55  NAAAGVS--GLNAGNAASIPSKCGVSIPYTIST------STDCSRVN   93
1rzl.pdb               53  NAARGIK--GLNAGNAASIPSKCGVSVPYTISA------SIDCSRVS   91
                             arg     L   Na sIp k  v  pYtis               


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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