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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Aug 12 22:26:39 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/MUSTANG_HOMSTRAD/results/phc.html
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#====================================
# Aligned_structures: 12
#   1: 1alla.pdb
#   2: 1allb.pdb
#   3: 1b33a.pdb
#   4: 1b8da.pdb
#   5: 1b8db.pdb
#   6: 1cpca.pdb
#   7: 1cpcb.pdb
#   8: 1liaa.pdb
#   9: 1liab.pdb
#  10: 1phna.pdb
#  11: 1phnb.pdb
#  12: 1qgwc.pdb
#
# Length:        186
# Identity:       11/186 (  5.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     12/186 (  6.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           42/186 ( 22.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1alla.pdb               1  --SIVTKSIVN--ADAEARYL-SPGELDRIKSFVTSGERRVRIAETMTGARERIIKQAGD   55
1allb.pdb               1  MQDAITSVINS--SDVQGKYL-DASAIQKLKAYFATGELRVRAATTISANAANIVKEAVA   57
1b33a.pdb               1  --SIVTKSIVN--ADAEARYL-SPGELDRIKSFVSSGEKRLRIAQILTDNRERIVKQAGD   55
1b8da.pdb               1  MKSVITTTISA--ADAAGRFP-SSSDLESIQGNIQRAAARLEAAQKLSGNHEAVVKEAGD   57
1b8db.pdb               1  MLDAFSRVVVT--SDAKAAYV-GGSDLQSLKSFINDGNKRLDAVNYIVSNASCIVSDAVS   57
1cpca.pdb               1  MKTPLTEAVAA--ADSQGRFL-SSTEIQTAFGRFRQASASLAAAKALTEKASSLASGAAN   57
1cpcb.pdb               1  MLDAFAKVVSQ--ADARGEYL-SGSQIDALSALVADGNKRMDVVNRITGNSSTIVANAAR   57
1liaa.pdb               1  MKSVITTTISA--ADAAGRYP-STSDLQSVQGNIQRAAARLEAAEKLGSNHEAVVKEAGD   57
1liab.pdb               1  MLDAFSRVVVN--SDSKAAYV-SGSDLQALKTFINDGNKRLDAVNYIVSNSSCIVSDAIS   57
1phna.pdb               1  MKTPITEAIAA--ADNQGRFL-SNTELQAVNGRYQRAAASLEAARSLTSNAERLINGAAQ   57
1phnb.pdb               1  MLDAFAKVVAQ--ADARGEFL-SNTQLDALSKMVSEGNKRLDVVNRITSNASAIVTNAAR   57
1qgwc.pdb               1  ----DAFSRVVAA------YVGGADLQALKKFIS-EGNKRLDSVNSIVSNASCIVSDAVS   49
                                                                                    A  

1alla.pdb              56  QLF--GKRPDVVSP-G-GNAYGADMTATCLRDLDYYLRLITYGIVAGDVTPIEEIGVVGV  111
1allb.pdb              58  KSLLY---SDVTRP-G-GNMYTTRRYAACIRDLDYYLRYATYAMLAGDPSILDERVLNGL  112
1b33a.pdb              56  QLF--QKRPDVVSP-G-GNAYGQEMTATCLRDLDYYLRLITYGIVAGDVTPIEEIGIVGV  111
1b8da.pdb              58  ACF--AKYSYLKNA-G-EAGDSPEKINKCYRDIDHYMRLINYSLVVGGTGPVDEWGIAGS  113
1b8db.pdb              58  GMI--CENPGLIAP-G-G-CYTNRRMAACLRDGEIILRYVSYALLAGDSSVLDDRCLNGL  112
1cpca.pdb              58  AVY--SKFPYTTSQNGPNFASTQTGKDKCVRDIGYYLRMVTYCLVVGGTGPLDDYLIGGI  115
1cpcb.pdb              58  SLF--AEQPQLIAP-G-GNAYTSRRMAACLRDMEIILRYVTYAIFAGDASVLDDRCLNGL  113
1liaa.pdb              58  ACF--SKYGYNKNP-G-EAGENQEKINKCYRDIDHYMRLINYTLVVGGTGPLDEWGIAGA  113
1liab.pdb              58  GMI--CENPGLITP-G-GNCYTNRRMAACLRDGEIILRYVSYALLAGDASVLEDRCLNGL  113
1phna.pdb              58  AVY--SKFPYTSQMPGPQYASSAVGKAKCARDIGYYLRMVTYCLVVGGTGPMDEYLIAGL  115
1phnb.pdb              58  ALF--SEQPQLIQP-G-G-AYTNRRMAACLRDMEIILRYVSYAIIAGDSSILDDRCLNGL  112
1qgwc.pdb              50  GMI--CENPSLISP-S-G-CYTNRRMAACLRDGEIILRYVSYALLSGDASVLEDRCLNGL  104
                                          g            C RD     R   Y    G           G 

1alla.pdb             112  REMYKSLGTPIEAIAEGVRAMKSVAT--SLLS---------------GADAAEAGSYFDY  154
1allb.pdb             113  KETYNSLGVPIGATVQAIQAMKEVTA--GLVG---------------GGAGKEMGIYFDY  155
1b33a.pdb             112  REMYKSLGTPIDAVAAGVSAMKNVAS--SILS---------------AEDAAEAGAYFDY  154
1b8da.pdb             114  REVYRALNLPGSAYIAAFTFTRDRLCVPRDMS---------------SQAGVEFTSALDY  158
1b8db.pdb             113  KETYIALGVPTASSSRAVSIMKATAT--AFITNTASGRKVEVAAGDCQALQAEAASYFDK  170
1cpca.pdb             116  AEINRTFDLSPSWYVEALKYIKANHGL----S---------------GDPAVEANSYIDY  156
1cpcb.pdb             114  KETYLALGTPGSSVAVGVQKMKDAAL--AIAGDT-----NGITRGDCASLMAEVASYFDK  166
1liaa.pdb             114  REVYRTLNLPSAAYIAAFVFTRDRLCIPRDMS---------------AQAGVEFCTALDY  158
1liab.pdb             114  KETYIALGVPTNSTVRAVSIMKAAAV--CFISNTASQRKVEVIEGDCSALASEVASYCDR  171
1phna.pdb             116  EEINRTFDLSPSWYVEALNYIKANHGL----S---------------GQAANEANTYIDY  156
1phnb.pdb             113  RETYQALGVPGASVAVGIEKMKDSAI--AIANDP-----SGITTGDCSALMAEVGTYFDR  165
1qgwc.pdb             105  KETYSSLGVPANSNARAVSIMKACAV--AFVNNTASQKKLSTPQGDCSGLASEVGGYFDK  162
                            E                                                  E     D 

1alla.pdb             155  LIGAMS  160
1allb.pdb             156  ICSGLS  161
1b33a.pdb             155  VAGALA  160
1b8da.pdb             159  VINSLC  164
1b8db.pdb             171  VGSSID  176
1cpca.pdb             157  AINALS  162
1cpcb.pdb             167  AASAVA  172
1liaa.pdb             159  LINSLS  164
1liab.pdb             172  VVAAVS  177
1phna.pdb             157  AINALS  162
1phnb.pdb             166  AATAVQ  171
1qgwc.pdb             163  VTAAIS  168
                                 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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