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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 02:45:43 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/lacI.html
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#====================================
# Aligned_structures: 3
#   1: 1lqc.pdb
#   2: 1qpza.pdb
#   3: 1uxd.pdb
#
# Length:         73
# Identity:       15/ 73 ( 20.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     31/ 73 ( 42.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           26/ 73 ( 35.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1lqc.pdb                1  MKPVTLYDVAEYAGVSYQTVSRVVNQAS----HVSAKTREKVEAAMAELNYI--PNRVA-   53
1qpza.pdb               1  ---ATIKDVAKRANVSTTTVSHVINKTR----FVAEETRNAVWAAIKELHYS----PSA-   48
1uxd.pdb                1  ---MKLDEIARLAGVSRTTASYVINGKAKQYR-VSDKTVEKVMAVVREHNYHPN-AVAAG   55
                               tl dvA  AgVS tTvS ViN        Vs kTrekV Aa  ElnY       A 

1lqc.pdb               54  ----QQ-------   55
1qpza.pdb              49  ----VARSLKVNH   57
1uxd.pdb               56  LRLQ---------   59
                                        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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