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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 21:25:26 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/igV.html
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#====================================
# Aligned_structures: 9
#   1: 1b88a.pdb
#   2: 1cd8.pdb
#   3: 1cid1.pdb
#   4: 1hnf.pdb
#   5: 1hnga.pdb
#   6: 1neu.pdb
#   7: 1qfpa.pdb
#   8: 1tvdb.pdb
#   9: 3cd4.pdb
#
# Length:        150
# Identity:        1/150 (  0.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:      3/150 (  2.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           73/150 ( 48.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1b88a.pdb               1  -MQ-QVRQS-PQSLTVWEGETAILNCSY-ENS-----A-----FDYFPWYQQFP---GEG   43
1cd8.pdb                1  S---QFRVS-PLDRTWNLGETVELKCQV-LLSN----P-----TSGCSWLFQPR-GAAAS   45
1cid1.pdb               1  ---------TSITAYKSEGESAEFSFPL-NL----GEE-----SLQGELRWKAEK----A   37
1hnf.pdb                1  T--------NALETWGALGQDINLDIPSFQM----SDD-----IDDIKWEKTS------D   37
1hnga.pdb               1  ---------DSGTVWGALGHGINLNIPNFQM----TDD-----IDEVRWERG--------   34
1neu.pdb                1  ----IVVYT-DREVYGAVGSQVTLHCSF-WSSEWVSDD------ISFTWRYQPEG--GRD   46
1qfpa.pdb               1  --T-WGVSS-PKNVQGLSGSCLLIPCIF-SYPA----DVPVSNGITAIWYYDYS----GK   47
1tvdb.pdb               1  ---DKVTQS-SPDQTVASGSEVVLLCTY-DTVY----S-----NPDLFWYRIRP---DYS   43
3cd4.pdb                1  ----------KKVVLGKKGDTVELTCTA-SQK-----K-----SIQFHWKNS-------N   32
                                             G                             w           

1b88a.pdb              44  PAL-LISIL--S-VSN--KKE-------DGRFTIF--FNKREKKLSLHIADSQPGDSATY   88
1cd8.pdb               46  PTF-LLYLS--Q-NKP--KAA--EG-LDTQRFSGK--RL--GDTFVLTLSDFRRENEGYY   92
1cid1.pdb              38  PSSQSWITFSLKNQKV--SVQK-STSN--PKFQLSE-T----LPLTLQIPQVSLQFAGSG   87
1hnf.pdb               38  KKK-IAQFRK---------EKE-TFKE-KDTYKLF--K-----NGTLKIKHLKTDDQDIY   78
1hnga.pdb              35  STL-VAEFKR---------KMK-PFLK-SGAFEIL--A-----NGDLKIKNLTRDDSGTY   75
1neu.pdb               47  AIS-IFHYA--K-GQP--YIDEVGT-F-KERIQWV--GDPSWKDGSIVIHNLDYSDNGTF   96
1qfpa.pdb              48  RQV-VIHSG-----DPKL-VD--KR-F-RGRAELM--GNMDHKVCNLLLKDLKPEDSGTY   94
1tvdb.pdb              44  FQF-VFYGD--D-SRS--EGA--DF-T-QGRFSVK--HILTQKAFHLVISPVRTEDSATY   91
3cd4.pdb               33  QIK-ILGNQ--G-SFL--TKGP-SK-L-NDRADSRRSLW-DQGNFPLIIKNLKIEDSDTY   82
                                                                         l             

1b88a.pdb              89  FCAASAS-FGDN--SKLIWGLGTSLVVN-P  114
1cd8.pdb               93  FCSALSN-------SIMYFSHFVPVFLPA-  114
1cid1.pdb              88  NLTLTL----D---RGI-LYQEVNLV----  105
1hnf.pdb               79  KVSIYDT---K--GKNV-LEKIFDLKIQ-E  101
1hnga.pdb              76  NVTVYST---N--GTRI-LNKALDLRIL-E   98
1neu.pdb               97  TCDVKN---------VG-KTSQVTLYVF-E  115
1qfpa.pdb              95  NFRFEISD-----SNRWLDVKGTTVTVT-T  118
1tvdb.pdb              92  YCAFTLP---P-PTDKLIFGKGTRVTVE-P  116
3cd4.pdb               83  ICEVE----------D--QKEEVQLLV---   97
                                                         


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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