################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 02:21:36 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ghf6.html
################################################################################################
#====================================
# Aligned_structures: 3
#   1: 1bvwa.pdb
#   2: 1qjwa.pdb
#   3: 1tml.pdb
#
# Length:        376
# Identity:       61/376 ( 16.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    199/376 ( 52.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          101/376 ( 26.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bvwa.pdb               1  -------GNPFEGVQLWANNYYRSEVHTLAIPQITDPALRAAASA-VAEVPSFQWLDRN-   51
1qjwa.pdb               1  ---ATYSGNPFVGVTPWANAYYASEVSSLAIPSLT-GAMATAAAA-VAKVPSFMWLDTL-   54
1tml.pdb                1  NDS-----------PFYVNPN--MSSAEWVRNNPN-DPRTPVIRDRIASVPQGTWFAHHN   46
                                           waN y  sev  laip  t  a   aa a vA VPsf Wld   

1bvwa.pdb              52  --VTVDTLLVQTLSEIREANQAGANPQYAAQIVVYDLPDRDCAAAASNGEWAIANNGVNN  109
1qjwa.pdb              55  --DKT-PLMEQTLADIRTANKNGG--NYAGQFVVFDLPDRDCAALASNGEYSIADGGVAK  109
1tml.pdb               47  PGQI-TGQVDALMSAAQAAG-------KIPILVVYNAPGRDCGNH-SSGGAP----SHSA   93
                                  l  qtls ir An       ya q VVydlPdRDCaa  SnGe      gv  

1bvwa.pdb             110  YKAYINRIREILISFSDVRTILVIEPDSLANMVTNMNVPKCSGAASTYRELTIYALKQLD  169
1qjwa.pdb             110  YKNYIDTIRQIVVEYSDIRTLLVIEPDSLANLVTNLGTPKCANAQSAYLECINYAVTQLN  169
1tml.pdb               94  YRSWIDEFAAGL--KN-RPAYIIVEPDLISLMS----SC-MQHVQQEVLETMAYAGKALK  145
                           Yk yId ir il   s  rt lviEPDslanmv     p c  aqs ylE   YA kqL 

1bvwa.pdb             170  --LPHVAMYMDAGHAGWLGWPANIQPAAELFAKIYEDAGKPRAVRGLATNVANYNAWSVS  227
1qjwa.pdb             170  --LPNVAMYLDAGHAGWLGWPANQDPAAQLFANVYKNASSPRALRGLATNVANYNGWNIT  227
1tml.pdb              146  AGSSQARIYFDAGHSAWH----SPAQMASWLQQAD----ISNSAHGIATNTSNYRWTA--  195
                             lp vamY DAGHagWl    n  paA lfa  y     pra rGlATNvaNYn w   

1bvwa.pdb             228  SPPPYTSPNPNYDEKHYIEAFRPLLEARG-F-PAQFIVDQGRSGKQPTGQKEWGHWCNAI  285
1qjwa.pdb             228  SPPSYTQGNAVYNEKLYIHAIGPLLANHGWS-NAFFITDQGRSGKQPTGQQQWGDWCNVI  286
1tml.pdb              196  ------------DEVAYAKAVLSAIG----NPSLRAVIDTSRNGNGP--A--GNEWCDPS  235
                                       dEk Yi A  pll        a fi DqgRsGkqP  q  wg WCn i

1bvwa.pdb             286  GTGFGMRPTANTGHQYVDAFVWVKPGGECDGTSDTTAARYDYHCGLEDALKPAPEAGQWF  345
1qjwa.pdb             287  GTGFGIRPSANTGDSLLDSFVWVKPGGECDGTSDSSAPRFDSHCALPDALQPAPQAGAWF  346
1tml.pdb              236  GRAIGTPSTTNTGDPMIDAFLWIKLPGEADGC--------------------IAGAGQFV  275
                           GtgfG rptaNTGd   DaFvWvKpgGEcDGt                    ap AGqwf

1bvwa.pdb             346  NEYFIQLLRNANPPF-  360
1qjwa.pdb             347  QAYFVQLLTNANPSFL  362
1tml.pdb              276  PQAAYEMAIAA-----  286
                             yf qll nA     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################