################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Fri Jul 22 20:09:47 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ghf2.html ################################################################################################ #==================================== # Aligned_structures: 2 # 1: 1bgla.pdb # 2: 1bhga.pdb # # Length: 347 # Identity: 68/347 ( 19.6%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 68/347 ( 19.6%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 98/347 ( 28.2%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1bgla.pdb 1 EVRIENGLLLLNGKPLLIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYP 60 1bhga.pdb 1 -VAVTKSQFLINGKPFYFHGVNKHEDADIRGKGFDWPLLVKDFNLLRWLGANAFRTSHYP 59 V L NGKP GVN HE G D V D L NA R SHYP 1bgla.pdb 61 NHPLWYTLC-DRYGLYVVDEANIETHGMVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPS 119 1bhga.pdb 60 YAEEV-MQMCDRYGIVVIDECPGVGLA---LPQ-FFNNVSLHHHMQVMEEVVRRDKNHPA 114 DRYG V DE L V RD NHP 1bgla.pdb 120 VIIWSLGNES-GH-----GANHDALYRWIKSVDPSRPVQYEGGGAD--------TTATDI 165 1bhga.pdb 115 VVMWSVANEPAS-HLESAGYYLKMVIAHTKSLDPSRPVTFVSN---SNYAADKGAPYVDV 170 V WS NE G KS DPSRPV D 1bgla.pdb 166 ICPMYARVDEDQPFPAVPKW-----------SIKKWLSLP---GETRPLILCEYAH-AMG 210 1bhga.pdb 171 ICLNS-YYSWY---------HDYGHLELIQLQLATQFEN-WYKKYQKPIIQSEYGAETIA 219 IC P I EY 1bgla.pdb 211 NSLG---------------GFAKYWQAFRQ--YPRLQGGFVWDWVDQ-SLIKYDENGNPW 252 1bhga.pdb 220 GF--HQDPPLMFTEEYQKSLLEQYHLGLDQKRRKYVVGELIWNFADFMTEQ--------- 268 Y Q G W D 1bgla.pdb 253 SAY-GGDF-GDTPNDRQFCMNGLVFADRTPHPALTEAKHQQQ----- 292 1bhga.pdb 269 ---SPTRVLG--------NKKGIFTRQRQPKSAAFLLRERYWKIANE 304 G G R P A #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################