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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:36:07 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/dpb.html
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#====================================
# Aligned_structures: 2
#   1: 1dpe.pdb
#   2: 1jeta.pdb
#
# Length:        554
# Identity:      118/554 ( 21.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    118/554 ( 21.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           84/554 ( 15.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1dpe.pdb                1  ------------KTLVYCSEGSPEGFNPQLFISGTTYDASSVPLYNRLVEFKIGTTEVIP   48
1jeta.pdb               1  ADVPAGVQLADKQTLVRNNGSEVQSLDPHKIEGVPESNVS-RDLFEGLLISDV-EGHPSP   58
                                        TLV           P           S   L   L           P

1dpe.pdb               49  GLAEKWEVSEDGKTYTFHLRKGVKWHDNKEFKPTRELNADDVVFSFDRQKNAQNPYHKVS  108
1jeta.pdb              59  GVAEKWENK-DFKVWTFHLRENAKWSD------GTPVTAHDFVYSWQRLADP------NT  105
                           G AEKWE   D K  TFHLR   KW D           A D V S  R            

1dpe.pdb              109  GGS-YEYFEGMGLP-----ELIS-------EVKKVDDNTVQFVLTRPEAPFLADLAMDFA  155
1jeta.pdb             106  ASPYASYLQYGHIANIDDIIAG-KKPATDLGVKALDDHTFEVTLSEPVPYFYKLLVHPSV  164
                                 Y                        VK  DD T    L  P   F   L     

1dpe.pdb              156  SILSKEYADAMMKAGTPEKL-DL-NPIGTGPFQLQQYQKDSRIRYKAFDGYWGT-KPQID  212
1jeta.pdb             165  SPVPKSAVEKFG-----DKWTQPANIVTNGAYKLKNWVVNERIVLERNPQYWDNAKTVIN  219
                           S   K             K     N    G   L       RI       YW   K  I 

1dpe.pdb              213  TLVFSITPDASVRYAKLQKNECQVMP-YPNPADIARMKQDKS--INLMEMPGLNVGYLSY  269
1jeta.pdb             220  QVTYLPISSEVTDVNRYRSGEIDMTYNNMPIELFQKLKKEI-PNEVRV-DPYLCTYYYEI  277
                                               E                K            P L   Y   

1dpe.pdb              270  NVQKKPLDDVKVRQALTYAVNKDAIIKAVYQGAGVSAKNLIPPTMWGYNDDVQDYTY---  326
1jeta.pdb             278  NNQKAPFNDVRVRTALKLALDRDIIVNKVKNQGDLPAYSYTPPYTDGAK--LVEPE-WFK  334
                           N QK P  DV VR AL  A   D I   V       A    PP   G             

1dpe.pdb              327  -----DPEKAKALLKEAGLEK--GFSIDLWAMPVQRPYNP--NARRMAEMIQADWAK-VG  376
1jeta.pdb             335  WSQQKRNEEAKKLLAEAGFTADKPLTFDLLYNT-------SDLHKKLAIAVASIWKKNLG  387
                                  E AK LL EAG         DL                  A      W K  G

1dpe.pdb              377  VQAKIVTYEWGEYLKRAKDGEHQTVMMGWTGDNGDPDNFFATEFSCAASEQGSNYSKWCY  436
1jeta.pdb             388  VNVNLENQEWKTFLDTRHQGTFDVARAGWCADYNEPTSFLNTML-SDS---SNNTAHYKS  443
                           V       EW   L     G       GW  D   P  F  T           N      

1dpe.pdb              437  KPFEDLIQPARATDDHNKRVELYKQAQVVMHDQAPALIIAHSTVFEPVRKEVKGYVV-DP  495
1jeta.pdb             444  PAFDKLIADTLKVADDTQRSELYAKAEQQLDKDSAIVPVYYYVNARLVKPWVGGYTGKDP  503
                             F  LI       D   R ELY  A                     V   V GY   DP

1dpe.pdb              496  LGKHHFENVSIE--  507
1jeta.pdb             504  LDNIYVKNLYIIKH  517
                           L      N  I   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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