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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 01:50:36 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/dCMP_cyt_deam.html
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#====================================
# Aligned_structures: 3
#   1: 1ctt1.pdb
#   2: 1ctt2.pdb
#   3: 1jtka.pdb
#
# Length:        139
# Identity:       11/139 (  7.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     48/139 ( 34.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           44/139 ( 31.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ctt1.pdb               1  -DEDALAFALLPLAAACARTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQS   59
1ctt2.pdb               1  ----DALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSGSYAENA-A-FNPTLPPLQG   54
1jtka.pdb               1  M-NRQELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENA-A-YSMCNCAERT   57
                                 l   a  Aa  a  PySkf vGaal  kdG  y G n Ena A    t  aeq 

1ctt1.pdb              60  AISHAWLSGEK--ALAAITVN-------YTPCGHCRQFMNELNSGL--DLRIHLP--GRE  106
1ctt2.pdb              55  ALILLNLKGYDYPDIQRAVLAEKADAPLI-QWDATSATLKALGCH---SIDRVLL-----  105
1jtka.pdb              58  ALFKAVSEGDT--EFQMLAVAADT-PGPVSPCGACRQVISELC-TKDVIVVLTNLQGQIK  113
                           Al  a l G      q   va         pcgacrq   eL           ll     

1ctt1.pdb             107  AHALRDYLPDAFGPKDLE-  124
1ctt2.pdb             106  ------------------A  106
1jtka.pdb             114  EMTVEELLPGAFSSEDLH-  131
                                              


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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