################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Fri Jul 22 19:15:50 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/cytochr_c552.html ################################################################################################ #==================================== # Aligned_structures: 2 # 1: 1fs8a.pdb # 2: 1qdba.pdb # # Length: 489 # Identity: 299/489 ( 61.1%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 299/489 ( 61.1%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 34/489 ( 7.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1fs8a.pdb 1 KTAHSQGIEGKAMSEEWARYYPRQFDSWKKTKESDNITDMLKEKPALVVAWAGYPFSKDY 60 1qdba.pdb 1 ------GIAGKEKSEEWAKYYPRQFDSWKKTKEYDSFTDMLAKDPALVIAWSGYAFSKDY 54 GI GK SEEWA YYPRQFDSWKKTKE D TDML PALV AW GY FSKDY 1fs8a.pdb 61 NAPRGHYYALQDNINTLRTGAPVDGKTGPLPSACWTCKSPDVPRIIEQDGELEYFTGKWA 120 1qdba.pdb 55 NSPRGHYYALQDNVNSLRTGAPVDAKTGPLPTACWTCKSPDVPRLIEEDGELEYFTGKWA 114 N PRGHYYALQDN N LRTGAPVD KTGPLP ACWTCKSPDVPR IE DGELEYFTGKWA 1fs8a.pdb 121 KYGDEIVNTIGCYNCHDDKSAELKSKVPYLDRGLSAAGFKTFAESTHQEKRSLVCAQCHV 180 1qdba.pdb 115 KYGSQIVNVIGCANCHDDKTAELKVRVPHLNRGLQAAGLKTFEESTHQDKRTLVCAQCHV 174 KYG IVN IGC NCHDDK AELK VP L RGL AAG KTF ESTHQ KR LVCAQCHV 1fs8a.pdb 181 EYYFKKTEWKDDKGVDKTAMVVTLPWSKGIS-----TEQMEAYYDEINF-ADWTHGISKT 234 1qdba.pdb 175 EYYFKKTEWKDAKGADKTAMVVTLPWANGVGKDGNAGVEGMIKYYDEI-NFSDWTHN-IS 232 EYYFKKTEWKD KG DKTAMVVTLPW G Y 1fs8a.pdb 235 -PMLKAQHP-DWELYKTGIHGQKG-VSCADCHMPYTQE----GAVKYSDHK-VGNPLDNM 286 1qdba.pdb 233 KTPMLKAQ-HPGFEFWKSGIHGQKGV-SCADCHM-PYTQEGSVKYSDHQ--VKENPLDSM 287 V NPLD M 1fs8a.pdb 287 DKSCMNCHRESEQKLKDIVKQKFERKEFLQDIAFDNIGKAHLETGKAMELGATDAELKEI 346 1qdba.pdb 288 DQSCMNCHRESESKLRGIVHQKYERKEFLNKVAFDNIGKAHLETGKAIEAGASDEELKEV 347 D SCMNCHRESE KL IV QK ERKEFL AFDNIGKAHLETGKA E GA D ELKE 1fs8a.pdb 347 RTHIRHAQWRADMAIAGHGSFFHAPEEVLRLLASGNEEAQKARIKLVKVLAKYGAIDYVA 406 1qdba.pdb 348 RKLIRHGQFKADMAIAAHGNYFHAPEETLRLLAAGSDDAQKARLLLVKILAKHGVMDYIA 407 R IRH Q ADMAIA HG FHAPEE LRLLA G AQKAR LVK LAK G DY A 1fs8a.pdb 407 PDFETKEKAQKLAKVDMEAFIAEKLKFKQTLEQEWKKQAIAKGRLNPESLKGVDEKSSYY 466 1qdba.pdb 408 PDFDTKDKAQKLAKVDIAALAAEKMKFKQTLEQEWKKEAKAKGRANPELYKDVDTINDGK 467 PDF TK KAQKLAKVD A AEK KFKQTLEQEWKK A AKGR NPE K VD 1fs8a.pdb 467 DKTKK---- 471 1qdba.pdb 468 SS---WNKK 473 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################