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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 01:39:28 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/csp.html
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#====================================
# Aligned_structures: 3
#   1: 1c9oa.pdb
#   2: 1csp.pdb
#   3: 1mjc.pdb
#
# Length:         70
# Identity:       37/ 70 ( 52.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     59/ 70 ( 84.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            4/ 70 (  5.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1c9oa.pdb               1  --MQRGKVKWFNNEKGYGFIEVE-GGSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGNRG   57
1csp.pdb                1  --MLEGKVKWFNSEKGFGFIEVE-GQDDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGNRG   57
1mjc.pdb                1  SGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG   60
                             m  GkVKWFN eKGfGFIeve G  DVFVHFsAIQgeGfKtLeEGQ VSFeIv GnrG

1c9oa.pdb              58  PQAANVVKL-   66
1csp.pdb               58  PQAANVTKEA   67
1mjc.pdb               61  PAAGNVTSL-   69
                           PqAaNVtkl 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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