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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 01:08:25 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/cat.html
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#====================================
# Aligned_structures: 3
#   1: 1cf9a.pdb
#   2: 2cae.pdb
#   3: 8cata.pdb
#
# Length:        743
# Identity:      145/743 ( 19.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    340/743 ( 45.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          275/743 ( 37.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1cf9a.pdb               1  DSLAPEDGSHRPAAEPTPPGAQPTAPGSLKAP-------DTRNEKLNSLEDVRKGSENYA   53
2cae.pdb                1  ----------------------------------------------------------KK    2
8cata.pdb               1  ---------------NRDPASDQ----MKHWKEQRAAQK------------------PDV   23
                                                                                       

1cf9a.pdb              54  LTTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQ  113
2cae.pdb                3  LTTAAGAPVVDNNNVITAGPRGPMLLQDVWFLEKLAHFDREVIPERR-HAKGSGAFGTFT   61
8cata.pdb              24  LTTGGGNPVGDKLNSLTVGPRGPLLVQDVVFTDEMAHFDRERIPERVVHAKGAGAFGYFE   83
                           LTT  G pv D  NsltaGpRGP LlqDv f ek aHFDrErIPER  HAkGsgAfGyF 

1cf9a.pdb             114  PYKSLSDITKADFLSDPNKITPVFVRFSTCQGGAGSADTVRDIRGFATKFYTEEGIFDLV  173
2cae.pdb               62  VTHDITKYTRAKIFSEVGKKTEMFARFSTVAGERGAADAERDIRGFALKFYTEEGNWDMV  121
8cata.pdb              84  VTHDITRYSKAKVFEHIGKRTPIAVRFSTVAGESGSADTVRDPRGFAVKFYTEDGNWDLV  143
                           vthdit ytkAk fs  gK Tp fvRFSTvaGe GsADtvRDiRGFA KFYTEeGnwDlV

1cf9a.pdb             174  GNNTPIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSA-HDTFWDYVSLQPETLHNVMWAMS  232
2cae.pdb              122  GNNTPVFYLRDPLKFPDLNHIVKRDPRTNMR-----NMAYKWDFFSHLPESLHQLTIDMS  176
8cata.pdb             144  GNNTPIFFIRDALLFPSFIHSQKRNPQTHLK-----DPDMVWDFWSLRPESLHQVSFLFS  198
                           GNNTPiFfirDalkFPdf H vKr P t          d  WDf Sl PEsLHqv   mS

1cf9a.pdb             233  DRGIPRSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFH  292
2cae.pdb              177  DRGLPLSYRFVHGFGSHTYSFINKDNERFWVKFHFRCQQGIKNLMDDEAEALVGKDRESS  236
8cata.pdb             199  DRGIPDGHRHMDGYGSHTFKLVNADGEAVYCKFHYKTDQGIKNLSVEDAARLAHEDPDYG  258
                           DRGiP syR m GfGsHTf liNadgea  vkFH k  qGiknL  deA  L g Dpd  

1cf9a.pdb             293  RRELWEAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRN  352
2cae.pdb              237  QRDLFEAIERGDYPRWKLQIQIMPEKEASTVPYNPFDLTKVWPHADYPLMDVGYFELNRN  296
8cata.pdb             259  LRDLFNAIATGNYPSWTLYIQVMTFSEAEIFPFNPFDLTKVWPHGDYPLIPVGKLVLNRN  318
                            RdLfeAIe GdyP w L iQ mpe ea  fpfnpfDlTKvwPh dyPl  VGk vLNRN

1cf9a.pdb             353  PDNFFAENEQAAFHPGHIVPGLDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPTC  412
2cae.pdb              297  PDNYFSDVEQAAFSPANIVPGISFSPDKMLQGRLFSYGDAHRYRLGV-NHHQIPVNAPKC  355
8cata.pdb             319  PVNYFAEVEQLAFDPSNMPPGIEPSPDKMLQGRLFAYPDTHRHRLGP-NYLQIPVNCPYR  377
                           PdNyFaevEQaAF P nivPGi fspDkmLQGRLFsY Dthr RLG  N hqIPvN P c

1cf9a.pdb             413  PYHNF-QRDGMHRMGIDT--NPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVR  469
2cae.pdb              356  PFHNY-HRDGAMRVDGN-SGNGITYEPNS--GGVFQEQP------DFKEPPLSIEGAADH  405
8cata.pdb             378  ARVANYQRDGPMCMMDN-QGGAPNYYPNS--FSAPEHQP------SALEHRTHFSGDVQR  428
                           p hn  qRDG mrm  n   n  nYePNS     p eqP       f e     eG   r

1cf9a.pdb             470  ERSPSFG-EYYSHPRLFW-LSQTPFEQRHIVDGFSFELSKVVRPYIRERVVDQLAHIDLT  527
2cae.pdb              406  WN-HREDEDYFSQPRALY-ELLSDDEHQRMFARIAGELSQA-SKETQQRQIDLFTKVHPE  462
8cata.pdb             429  FN-SAND-DNVTQVRTFYLKVLNEEQRKRLCENIAGHLKDA-QLFIQKKAVKNFSDVHPE  485
                            n    d dy sqpR fy   l   e  r    iageLs a    iq r vd f  vhpe

1cf9a.pdb             528  LAQAVAKNLGIELTDDQLNITPPPDVNGLKKDPSLSLYAIPDGDVKGRVVAILLNDEVRS  587
2cae.pdb              463  YGAGVEKAIK--------------------------------------------------  472
8cata.pdb             486  YGSRIQALLD--------------------------------------------------  495
                           yg  v k l                                                   

1cf9a.pdb             588  ADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCGNIA  647
2cae.pdb                   ------------------------------------------------------------     
8cata.pdb                  ------------------------------------------------------------     
                                                                                       

1cf9a.pdb             648  DIADNGDANYYLMEAYKHLKPIALAGDARKFKATIKIADQGEEGIVEADSADGSFMDELL  707
2cae.pdb                   ------------------------------------------------------------     
8cata.pdb                  ------------------------------------------------------------     
                                                                                       

1cf9a.pdb             708  TLMAAHRVWSRIPKIDKIPA---  727
2cae.pdb              473  --------------------VL-  474
8cata.pdb             496  --------------------KYN  498
                                                  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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