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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:02:18 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/capsid_n.html
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#====================================
# Aligned_structures: 2
#   1: 1ak4c.pdb
#   2: 2eiaa.pdb
#
# Length:        154
# Identity:       26/154 ( 16.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     26/154 ( 16.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           33/154 ( 21.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ak4c.pdb               1  PIVQNLQGQMVHQAISPR--TLNAWVKVVEEKA-FSPEVIPMFSALSEGATPQDLNTMLN   57
2eiaa.pdb               1  ------------------PRGYTTWVNTIQTNGLLNEASQNLFGILSVDCTSEEMNAFLD   42
                                                   WV                F  LS   T    N  L 

1ak4c.pdb              58  TVGGHQAAMQMLKETINEEAAEWDRLHPVHA---GPIAPGQMREPRGSDIAGTTSTLQEQ  114
2eiaa.pdb              43  VVPGQAGQKQILLDAIDKIADDWDNRHPLP-NAPLVAPPQGPIPMTARFIRGLGVPRERQ  101
                            V G     Q L   I   A  WD  HP          P          I G       Q

1ak4c.pdb             115  IGWMTHNPPI-PVGEIYKRWIILGLNKIVRMY--  145
2eiaa.pdb             102  ME----PAF-DQFRQTYRQWIIEAMSEGIKVMIG  130
                                           Y  WII            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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