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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:54:33 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/cah.html
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#====================================
# Aligned_structures: 5
#   1: 1ca2.pdb
#   2: 1koqa.pdb
#   3: 1znca.pdb
#   4: 2cab.pdb
#   5: 3znc.pdb
#
# Length:        292
# Identity:       38/292 ( 13.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     66/292 ( 22.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           88/292 ( 30.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ca2.pdb                1  --------------HWGYGKHNGPEHWHKDF---P-IAKGERQSPVDIDTHTAKYDPSLK   42
1koqa.pdb               1  T-------------HWGYTGHDSPESWGNLSEEFRLCSTGKNQSPVNITE--TVS-GKLP   44
1znca.pdb               1  -WCYEVQAESSNYP------CLVPVKW---G---G-NCQKDRQSPINIVTTKAKVDKKLG   46
2cab.pdb                1  ---------------WGYDDKNGPEQWSKLY---P-IANGNNQSPVDIKTSETKHDTSLK   41
3znc.pdb                1  -WCYEIQTEDPRSS------CLGPEKW---P---G-ACKENQQSPINIVTARTKVNPRLT   46
                                                  Pe W               QSP  I t   k    L 

1ca2.pdb               43  PLSVSY-DQATSLRILNNGHAFNVEFD-DSQDKAVLKGGPLDGTYRLIQFHFHWGSLDGQ  100
1koqa.pdb              45  AIKVNY--KPSMVDVENNGHTIQVNYPEG---GNTLTV--NGRTYTLKQFHFHV------   91
1znca.pdb              47  RFFFSGYDKKQTWTVQNNGHSVMMLLE-N---KASISGGGLPAPYQAKQLHLHWSDLPYK  102
2cab.pdb               42  PISVSY-NPATAKEIINVGHSFHVNFE-DNQDRSVLKGGPFSDSYRLFQFHFHWGSTNEH   99
3znc.pdb               47  PFILVGYDQKQQWPIKNNQHTVEMTLG-G---GACIIGGDLPARYEAVQLHLHWSNGNDN  102
                                           NngH                 g      Y   Q H Hw      

1ca2.pdb              101  GSEHTVDKKKYAAELHLVHWNTKY--------GDFGKA-VQQPDGLAVLGIFLKVG-SAK  150
1koqa.pdb              92  PSENQIKGRTFPMEAHFVHLDE-N-------K------------QPLVLAVLYEAG-KTN  130
1znca.pdb             103  GSEHSLDGEHFAMEMHIVHEKEKGTSRNVKE------AQ-DPEDEIAVLAFLVEAGTQVN  155
2cab.pdb              100  GSEHTVDGVKYSAELHVAHWNSAK-------YSSLAEA-ASKADGLAVIGVLMKVG-EAN  150
3znc.pdb              103  GSEHSIDGRHFAMEMHIVHKK-L--------------------DKFAVLAFMIEVGDKVN  141
                           gSEh  dg     E H vH                           aVl      G   n

1ca2.pdb              151  PGLQKVVDVLDSIKTKGKSADFTNFDPRGLLPE--SL-DYWTYPGSLTTPPLLECVTWIV  207
1koqa.pdb             131  GRLSSIWNVMP--MTAGKVKLNQPFDASTLLPK--RL-KYYRFAGSLTTPPCTEGVSWLV  185
1znca.pdb             156  EGFQPLVEALSNIPKPEMSTTMAESSLLDLLPKEEKLRHYFRYLGSLTTPTCDEKVVWTV  215
2cab.pdb              151  PKLQKVLDALQAIKTKGKRAPFTNFDPSTLLPS--SL-DFWTYPGSLTHPPLYESVTWII  207
3znc.pdb              142  KGFQPLVEALPSISKPHSTSTVRESSLQDMLPPSTKMYTYFRYNGSLTTPNCDETVIWTV  201
                              q     l                   lLP    l  y  y GSLTtP   E V W v

1ca2.pdb              208  LKEPISVSSEQVLKFRKL-NFNGEGE-PEELMVDNWRPAQPLKNRQIKASF-  256
1koqa.pdb             186  LKTYDHIDQAQAEKFTRA-V-----------GSENNRPVQPLNARVVIE---  222
1znca.pdb             216  FREPIQLHREQILAFSQKLYYDK--EQ-TVSMKDNVRPLQQLGQRTVIKS--  262
2cab.pdb              208  CKESISVSSEQLAQFRSL-LSNVEGD-NAVPMQHNNRPTQPLKGRTVRASF-  256
3znc.pdb              202  YKQPIKIHKNQFLEFSKNLYYDE--DQ-KLNMKDNVRPLQPLGKRQVFKSHA  250
                            k  i     Q   F                m  N RP QpL  R v     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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