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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:59:25 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/biopterin_H.html
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#====================================
# Aligned_structures: 2
#   1: 1toh.pdb
#   2: 4pah.pdb
#
# Length:        336
# Identity:      196/336 ( 58.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    196/336 ( 58.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           39/336 ( 11.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1toh.pdb                1  KVPWFPRKVSELDKC-----------DLDHPGFSDQVYRQRRKLIAEIAFQYKHGEPIPH   49
4pah.pdb                1  TVPWFPRTIQELDRFANQILSYGAELDADHPGFKDPVYRARRKQFADIAYNYRHGQPIPR   60
                            VPWFPR   ELD             D DHPGF D VYR RRK  A IA  Y HG PIP 

1toh.pdb               50  VEYTAEEIATWKEVYVTLKGLYATHACREHLEGFQLLERYCGYREDSIPQLEDVSRFLKE  109
4pah.pdb               61  VEYMEEEKKTWGTVFKTLKSLYKTHACYEYNHIFPLLEKYCGFHEDNIPQLEDVSQFLQT  120
                           VEY  EE  TW  V  TLK LY THAC E    F LLE YCG  ED IPQLEDVS FL  

1toh.pdb              110  RTGFQLRPVAGLLSARDFLASLAFRVFQCTQYIRHASSPMHSPEPDCCHELLGHVPMLAD  169
4pah.pdb              121  CTGFRLRPVAGLLSSRDFLGGLAFRVFHCTQYIRHGSKPMYTPEPDICHELLGHVPLFSD  180
                            TGF LRPVAGLLS RDFL  LAFRVF CTQYIRH S PM  PEPD CHELLGHVP   D

1toh.pdb              170  RTFAQFSQDIGLASLGASDEEIEKLSTVYWFTVEFGLCKQNGELKAYGAGLLSSYGELLH  229
4pah.pdb              181  RSFAQFSQEIGLASLGAPDEYIEKLATIYWFTVEFGLCKQGDSIKAYGAGLLSSFGELQY  240
                           R FAQFSQ IGLASLGA DE IEKL T YWFTVEFGLCKQ    KAYGAGLLSS GEL  

1toh.pdb              230  SLSEEPEVRAFDPDTAAVQPYQDQTYQPVYFVSESFNDAKDKLRNYASRIQRPFSVKFDP  289
4pah.pdb              241  CLSEKPKLLPLELEKTAIQNYTVTEFQPLYYVAESFNDAKEKVRNFAATIPRPFSVRYDP  300
                            LSE P          A Q Y     QP Y V ESFNDAK K RN A  I RPFSV  DP

1toh.pdb              290  YTLAIDVLDSPHTIQRSLEGVQDELHTLAHALSAIS  325
4pah.pdb              301  YTQRIEVL----------------------------  308
                           YT  I VL                            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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