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# Program: MUSTANG v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, P. J. Stuckey, J. C. Whisstock, and A. M. Lesk
# Rundate: Wed Aug 31 13:13:17 2005
# Report_file: bac_lipase.html
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#====================================
# Aligned_structures: 2
#   1: 1cvl.pdb
#   2: 4lipd.pdb
#
# Length:        330
# Identity:      245/330 ( 74.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    245/330 ( 74.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           25/330 (  7.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1cvl.pdb                1  ADTYAATRYPVILVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYVANLSGFQSDDGPNG   60
4lipd.pdb               1  -DNYAATRYPIILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYVANLSGFQSDDGPNG   59
                            D YAATRYP ILVHGL GTDK A V  YWYGIQ DLQ  GA VYVANLSGFQSDDGPNG

1cvl.pdb               61  RGEQLLAYVKQVLAATGATKVNLIGHSQGGLTSRYVAAVAPQLVASVTTIGTPHRGSEFA  120
4lipd.pdb              60  RGEQLLAYVKTVLAATGATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGTPHRGSEFA  119
                           RGEQLLAYVK VLAATGATKVNL GHSQGGLTSRYVAAVAP LVASVTTIGTPHRGSEFA

1cvl.pdb              121  DFVQDVLKTDPTGLS-STVIAAFVNVFGTLVSSSHNTDQ------DALAALRTLTTAQTA  173
4lipd.pdb             120  DFVQGVLAYDPTGLSSTVIAAFVNVFGILTSSS------NNTNQDA-LAALKTLTTAQAA  172
                           DFVQ VL  DPTGLS     A          SS              LAAL TLTTAQ A

1cvl.pdb              174  TYNRNFPSAGLGAPGSCQTGAATETVGGSQHLLYSWGGTAIQPTSTVT------GATDTS  227
4lipd.pdb             173  TYNQNYPSAGLGAPGSCQTGAPTETVGGNTHLLYSWAGTAIQPTI---SVFGVTGATDTS  229
                           TYN N PSAGLGAPGSCQTGA TETVGG  HLLYSW GTAIQPT          GATDTS

1cvl.pdb              228  TG-TLDVANVTDPSTLALLATGAVMINRASGQNDGLVSRCSSLFGQVISTSYHWNHLDEI  286
4lipd.pdb             230  TIPLVDPANALDPSTLALFGTGTVMVNRGSGQNDGVVSKCSALYGQVLSTSYKWNHLDEI  289
                           T    D AN  DPSTLAL  TG VM NR SGQNDG VS CS L GQV STSY WNHLDEI

1cvl.pdb              287  NQLLGVRGANAEDPVAVIRTHVNRLKLQGV  316
4lipd.pdb             290  NQLLGVRGANAEDPVAVIRTHANRLKLAGV  319
                           NQLLGVRGANAEDPVAVIRTH NRLKL GV


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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