################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:56:24 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/avi.html
################################################################################################
#====================================
# Aligned_structures: 2
#   1: 1ptsa.pdb
#   2: 1rava.pdb
#
# Length:        134
# Identity:       38/134 ( 28.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     38/134 ( 28.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           25/134 ( 18.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ptsa.pdb               1  AEA---GITGTWYNQLGSTFIVTAGAD-GALTGTYESAVGN-AE--SRYVLTGRYDSA-P   52
1rava.pdb               1  ---RKCSLTGKWTNDLGSNMTIGAVNSRGEFTGTYITAVTATSNEIKESPLHGTENTINK   57
                                   TG W N LGS     A    G  TGTY  AV           L G       

1ptsa.pdb              53  AG-SGTALGWTVAWKNNYRNAHSATTWSGQYVGG---AEARINTQWLLTSGT-TEANAWK  107
1rava.pdb              58  --RTQPTFGFTVNWK----FSESTTVFTGQCFIDRNGK-EVLKTMWLLRSSVNDIGDDWK  110
                                   G TV WK       S T   GQ             T WLL S        WK

1ptsa.pdb             108  STLVGHDTFTKV--  119
1rava.pdb             111  ATRVGINIFTRLRT  124
                            T VG   FT    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################