################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:46:45 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/arrestin_NC.html
################################################################################################
#====================================
# Aligned_structures: 2
#   1: 1cf1a.pdb
#   2: 1g4ma.pdb
#
# Length:        386
# Identity:      202/386 ( 52.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    202/386 ( 52.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           43/386 ( 11.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1cf1a.pdb               1  -HVIFKKISRDKSVTIYLGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYG   59
1g4ma.pdb               1  GTRVFKKASPNGKLTVYLGKRDFVDHIDLVEPVDGVVLVDPEYLKERRVYVTLTCAFRYG   60
                               FKK S     T YLGKRD  DH   VEPVDGVVLVDPE  K  RVYV LTCAFRYG

1cf1a.pdb              60  Q---EDIDVMGLSFRRDLYFSQVQVFPPVG-AS-GATTRLQESLIKKLGANTYPFLLTFP  114
1g4ma.pdb              61  REDLDVLG---LTFRKDLFVANVQSFPPAPED-KKPLTRLQERLIKKLGEHAYPFTFEIP  116
                                      L FR DL    VQ FPP         TRLQE LIKKLG   YPF    P

1cf1a.pdb             115  DYLPCSVMLQPAPQDVG-KSCGVDFEIKAFATHSTDVEE-DKIPKKSSVRLLIRKVQHAP  172
1g4ma.pdb             117  PNLPCSVTLQPGPEDT-GKACGVDYEVKAFCAE-N---LEEKIHKRNSVRLVIRKVQYAP  171
                             LPCSV LQP P D   K CGVD E KAF           KI K  SVRL IRKVQ AP

1cf1a.pdb             173  -RDMGPQPRAEASWQFF--MSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIK  229
1g4ma.pdb             172  ER-P--GPQPTAETTRQFLMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIK  228
                            R     P   A       MSDKPL L  SL KEIYYHGEPI V V VTN T KTVKKIK

1cf1a.pdb             230  VLVEQVTNVVLYSSDYYIKTVAAEEAQEKVPPNSSLTKTLTLVPLLANNRERRGIALDGK  289
1g4ma.pdb             229  ISVRQYADICLFNTAQYKCPVAMEEADDTVAPSSTFCKVYTLTPFLANNREKRGLALDGK  288
                             V Q     L     Y   VA EEA   V P S   K  TL P LANNRE RG ALDGK

1cf1a.pdb             290  IKHEDTNLASSTIIKEGIDKTVMGILVSYQIKVKLTVSGLLGELTSSEVATEVPFRLMHP  349
1g4ma.pdb             289  LKHEDTNLASSTLLREGANREILGIIVSYKVKVKLVVSR-G-----SDVAVELPFTLMHP  342
                            KHEDTNLASST   EG      GI VSY  KVKL VS        S VA E PF LMHP

1cf1a.pdb             350  QPED--NFVFEEFARQNLKDAGEYKE  373
1g4ma.pdb             343  KPK-DDDIVFEDFAR-----------  356
                            P      VFE FAR           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################