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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 00:29:23 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/apbact.html
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#====================================
# Aligned_structures: 3
#   1: 1amp.pdb
#   2: 1cg2a.pdb
#   3: 1xjo.pdb
#
# Length:        351
# Identity:       19/351 (  5.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     99/351 ( 28.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          134/351 ( 38.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1amp.pdb                1  MPP-ITQQATVTAWLP---QVDASQITGTISSLESFT-----NRFYT-TTSGAQASDWIA   50
1cg2a.pdb               1  ---QKR-DNVLFQAATD----EQPAVIKTLEKLVNIE-----T-GTGDAEGIAAAGNFLE   46
1xjo.pdb                1  -----------------APDIPLANVKAHLTQLSTIAANNGGNRAHG-RPGYKASVDYVK   42
                                                    v  tl  L  i      n   g   g aaa d   

1amp.pdb               51  SEWQALSASLPNASVKQVSH--SGYNQKSVVMTITGSEA-PDEWIVIGGHLDSTIGSHTN  107
1cg2a.pdb              47  AELKNLG----F-TVTRSKSA-GLVVGDNIVGKIKGR-GG--KNLLLMSHMDTVYLKGIL   97
1xjo.pdb               43  AKLDAAG----Y-TTTLQQFTSGGATGYNLIANWPG-GD-PNKVLMAGAHLDSVS-----   90
                           ael alg      tvt      gg  g n v  i G      k l  g HlDsv      

1amp.pdb              108  EQS-----------VAPGADDDASGIAAVTEVIRVLSENNFQPKRSIAFMAYAAEEVGLR  156
1cg2a.pdb              98  AKAPFRVEGDKAYG--PGIADDKGGNAVILHTLKLLKEYGVRDYGTITVLFNTDEEKGSF  155
1xjo.pdb               91  --------------SGAGINDNGSGSAAVLETALAVSRAGYQPDKHLRFAWWGAEELGLI  136
                                           pGi Dd sG Aavlet   lse g qp   i f    aEE Gl 

1amp.pdb              157  GSQDLANQYK--SEGKNVVSALQLDMTNYKGSAQ-----DVVFITD-Y-T---DSNFTQY  204
1cg2a.pdb             156  GSRDLIQEEA--K---LADYVLSFEPTS-----A----GDEKLSLGTFNAGEGGKKLVDK  201
1xjo.pdb              137  GSKFYVNNLPSADR-SKLAGYLNFDI--------GSPNPGYFVYD----D---DPVIEKT  180
                           GS dl n              L fd              d             d      

1amp.pdb              205  LTQLMDEYLPSLTYGFDTC-GYACSDHASWHNAGYPAAMP---FESKFN-----------  249
1cg2a.pdb             202  AVAYYKEA-G-GTLGVEERTGG-GTDAAYAALSGKPVIESLGLPGFG-------------  245
1xjo.pdb              181  FKNYFAGL-N-VPTEI-------RSDHAPFKNVGVPVGGL---FTGA--GYTKSAAQAQK  226
                              y  e     t g         sDhA   n G Pv      f                

1amp.pdb              250  -------DYNPRIHTTQD-TLANSDPT-GSHAKKFTQLGLAYAIEMGSATG  291
1cg2a.pdb             246  ------------YHSDKAE---Y-V--DISAIPRRLYMAARLIMDLGAG--  276
1xjo.pdb              227  WGGTAGQAFDRCYHSSCD-SLSN-I--NDTALDRNSDAAAHAIWTLSS---  270
                                       yHs  d    n      sa  r    aa  i  lgs   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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