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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:35:58 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/aminotran_4.html
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#====================================
# Aligned_structures: 2
#   1: 1a3ga.pdb
#   2: 5daaa.pdb
#
# Length:        304
# Identity:       73/304 ( 24.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     73/304 ( 24.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           36/304 ( 11.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a3ga.pdb               1  KADYIWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVVFRHREHMQRLHDS   60
5daaa.pdb               1  --GYTLWNDQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYN----GEMFTVNEHIDRLYAS   54
                              Y   N   V  E  K          G  V E    Y        F   EH  RL  S

1a3ga.pdb              61  AKIYRFPVSQSIDELMEACRDVIRKNNLTSAYIRPLIFVGDVGMGVNPPAG-YSTDVIIA  119
5daaa.pdb              55  AEKIRITIPYTKDKFHQLLHELVEKNELNTGHIYFQVTRGTSPRAHQFPENTVKPVIIGY  114
                           A   R       D           KN L    I      G        P        I  

1a3ga.pdb             120  AFPW--------QGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIA  171
5daaa.pdb             115  TKENPRPLENLEKGVKATFVEDIRW----LRCDIKSLN-LLGAVLAKQEAHEKGCYEAIL  169
                                        G  A      R          K     L   L   EA   G  E I 

1a3ga.pdb             172  LDVNGYISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLSRE  231
5daaa.pdb             170  HR-NNTVTKGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTH  228
                              N     G   N F  KDG L T P     L GITRD  I  A E    V E      

1a3ga.pdb             232  SLYLADEVFMSGTAAEITPVRSVDGIQVGEGRCGPVTKRIQQAFFGLFTGETEDKWGWLD  291
5daaa.pdb             229  EALKMDELFVTSTTSEITPVIEIDGKLIRDGKVGEWTRKLQKQFETKIP-----------  277
                                DE F   T  EITPV   DG     G  G  T   Q  F                

1a3ga.pdb             292  QVNQ  295
5daaa.pdb                  ----     
                               


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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