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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:30:22 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/aminobp.html
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#====================================
# Aligned_structures: 2
#   1: 2lbp.pdb
#   2: 2liv.pdb
#
# Length:        346
# Identity:      272/346 ( 78.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    272/346 ( 78.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            2/346 (  0.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


2lbp.pdb                1  DDIKVAVVGAMSGPIAQWGIMEFNGAEQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVA   60
2liv.pdb                1  EDIKVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIAKYDDACDPKQAVA   60
                            DIKVAVVGAMSGP AQ G  EF GAEQA  DINAKGGIKG KL    YDDACDPKQAVA

2lbp.pdb               61  VANKIVNDGIKYVIGHLCSSSTQPASDIYEDEGILMISPGATAPELTQRGYQHIMRTAGL  120
2liv.pdb               61  VANKVVNDGIKYVIGHLCSSSTQPASDIYEDEGILMITPAATAPELTARGYQLILRTTGL  120
                           VANK VNDGIKYVIGHLCSSSTQPASDIYEDEGILMI P ATAPELT RGYQ I RT GL

2lbp.pdb              121  DSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGEK  180
2liv.pdb              121  DSDQGPTAAKYILEKVKPQRIAIVHDKQQYGEGLARAVQDGLKKGNANVVFFDGITAGEK  180
                           DS QGPTAAKYILE VKPQRIAI HDKQQYGEGLAR VQDGLK  NANVVFFDGITAGEK

2lbp.pdb              181  DFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKTQFMGPEGVGNASLSNIAGDA  240
2liv.pdb              181  DFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVANVSLSNIAGES  240
                           DFS L ARLKKENIDFVYYGGY PEMGQ LRQAR  GLKTQFMGPEGV N SLSNIAG  

2lbp.pdb              241  AEGMLVTMPKRYDQDPANQGIVDALKADKKDPSGPYVWITYAAVQSLATALERTGSDEPL  300
2liv.pdb              241  AEGLLVTKPKNYDQVPANKPIVDAIKAKKQDPSGAFVWTTYAALQSLQAG-L-NQSDDPA  298
                           AEG LVT PK YDQ PAN  IVDA KA K DPSG  VW TYAA QSL        SD P 

2lbp.pdb              301  ALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTKAK  346
2liv.pdb              299  EIAKYLKANSVDTVMGPLTWDEKGDLKGFEFGVFDWHANGTATDAK  344
                              K LKAN   TV GPL WDEKGDLKGF FGVF WHA G  T AK


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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