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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 04:59:53 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/aldedh.html
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#====================================
# Aligned_structures: 4
#   1: 1a4sa.pdb
#   2: 1ad3a.pdb
#   3: 1ag8a.pdb
#   4: 1bxsa.pdb
#
# Length:        544
# Identity:       66/544 ( 12.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    199/544 ( 36.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          126/544 ( 23.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a4sa.pdb               1  AQLVDSMPSAS-----TGSVVVTDDLNYWGGRRIKSKDG--ATTEPVFEPATGRVLCQMV   53
1ad3a.pdb                  ------------------------------------------------------------     
1ag8a.pdb               1  ------------VPTPNQQPEVLYNQIFINNEWHD-A--VSKKTFPTVNPSTGDVICHVA   45
1bxsa.pdb               1  -----------DVPAPLTNLQFKYTKIFINNEWHS-S--VSGKKFPVFNPATEEKLCEVE   46
                                                                                       

1a4sa.pdb              54  PCGAEEVDQAVQSAQAAYL--K-W-SKMAGIERSRVMLEAARIIRERRDNIAKLEVINNG  109
1ad3a.pdb               1  -----SISDTVKRAREAFN--S-GKT-RSLQFRIQQLEALQRMINENLKSISGALASDLG   51
1ag8a.pdb              46  EGDKADVDRAVKAARAAFQLGSPW-RRMDASERGRLLNRLADLIERDRTYLAALETLDNG  104
1bxsa.pdb              47  EGDKEDVDKAVKAARQAFQIGSPW-RTMDASERGRLLNKLADLIERDRLLLATMEAMNGG  105
                                 vd aVk Ar Af   s w   m   eR r l  la  I   r   a  e    G

1a4sa.pdb             110  KTIT---EAEYDIDAAWQCIEYYAGLAPTL-SGQHIQLP--G-GAFAYTRREPLGVCAGI  162
1ad3a.pdb              52  KN--EWTSYYEEVAHVLEELDTTIKELPDWAEDEPVAKTRQTQQDDLYIHSEPLGVVLVI  109
1ag8a.pdb             105  KP--YIISYLVDLDMVLKCLRYYAGWADKY-HGKTIPID--G-DYFSYTRHEPVGVCGQI  158
1bxsa.pdb             106  KL--FSNAYLMDLGGCIKTLRYCAGWADKI-QGRTIPMD--G-NFFTYTRSEPVGVCGQI  159
                           K       y  d       l y ag a     g  i     g   f Ytr EP GVc  I

1a4sa.pdb             163  LAWNYPFMIAAWKCAPALACGNAVVFKPSPMTPVTGVILAEIFHEAGVPVGLVNVVQGGA  222
1ad3a.pdb             110  GAWNYPFNLTIQPMVGAVAAGNAVILKPSEVSGHMADLLATLIPQYMDQ-NLYLVVKGGV  168
1ag8a.pdb             159  IPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNVIPGFG  218
1bxsa.pdb             160  IPWNFPLLMFLWKIGPALSCGNTVVVKPAEQTPLTALHMGSLIKEAGFPPGVVNIVPGYG  219
                             WN P     wk  pAla GN Vv Kp e tp ta   a li eag p g vnvv G  

1a4sa.pdb             223  -ETGSLLCHHPNVAKVSFTGSVPTGKKVMEMSA-KTVKHVTLELGGKSPLLIFKDCELEN  280
1ad3a.pdb             169  -PETTELLK-ERFDHIMYTGSTAVGKIVMAAAA-KHLTPVTLELGGKSPCYVDKDCDLDV  225
1ag8a.pdb             219  PTAGAAIASHEDVDKVAFTGSTEVGHLIQVAAGKSNLKRVTLEIGGKSPNIIMSDADMDW  278
1bxsa.pdb             220  PTAGAAISSHMDVDKVAFTGSTEVGKLIKEAAGKSNLKRVSLELGGKSPCIVFADADLDN  279
                              g        vdkv fTGSt vGk    aa    lk VtLElGGKSP     D dld 

1a4sa.pdb             281  AVRGALMANFLTQGQVCTNGTRVFVQREIMPQFLEEVVKRTKAI-VVGDPLLTETRMGGL  339
1ad3a.pdb             226  ACRRIAWGKFMNSGQTCVAPDYILCDPSIQNQIVEKLKKSLKDFY-GEDAKQS-RDYGRI  283
1ag8a.pdb             279  AVEQAHFALFFNQGQCCCAGSRTFVQEDIYAEFVERSVARAKSR-VVGNPFDSRTEQGPQ  337
1bxsa.pdb             280  AVEFAHQGVFYHQGQCCIAASRLFVEESIYDEFVRRSVERAKKY-VLGNPLTPGVSQGPQ  338
                           Av  a    F  qGQ C a  r fv   I   fve  v r K     g p       G  

1a4sa.pdb             340  ISKPQLDKVLGFVAQAKKEGARVLCGGEPLTPSDPKLKNGYFMSPCVLDNCRDDMTCVKE  399
1ad3a.pdb             284  INDRHFQRVKGLIDN----Q-KVAHGGTWD-------QSSRYIAPTILVDVDPQSPVMQE  331
1ag8a.pdb             338  VDETQFKKVLGYIKSGKEEGLKLLCGGGAAA------DRGYFIQPTVFGDLQDGMTIAKE  391
1bxsa.pdb             339  IDKEQYEKILDLIESGKKEGAKLECGGGPWG------NKGYFIQPTVFSDVTDDMRIAKE  392
                           i   q  kvlg i      g k  cGG            gyfi Ptv  d  d m   kE

1a4sa.pdb             400  EIFGPVMSVLPFDTEEEVLQRANNTTFGLASGVFTRDISRAHRVAANLEAGTCYINTYSI  459
1ad3a.pdb             332  EIFGPVMPIVCVRSLEEAIQFINQREKPLALYVFSNNEKVIKKMIAETSSGGVTANDVIV  391
1ag8a.pdb             392  EIFGPVMQILKFKSMEEVVGRANNSKYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDV  451
1bxsa.pdb             393  EIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGIFTNDIDKAITVSSALQSGTVWVNCYSV  452
                           EIFGPVm i  f s eev  raNn   gLa  vFt d   a      l  Gtv  N y v

1a4sa.pdb             460  --SPVEVPFGGYKMSGFGRENGQATVDYYSQLKTVIVEMG-----------------DVD  500
1ad3a.pdb             392  HITVPTLPFGGVGNSGMGAYHGKKSFETFSHR--RSCLVKSLLNEEAHKARYPPSPA---  446
1ag8a.pdb             452  --FGAQSPFGGYKLSGSGRELGEYGLQAYTEVKTVTVRVP-----------------QK-  491
1bxsa.pdb             453  --VSAQCPFGGFKMSGNGRELGEYGFHEYTEVKTVTIKIS-----------------QK-  492
                                  PFGG k SG Gre G      y     v                         

1a4sa.pdb             501  SLF-  503
1ad3a.pdb                  ----     
1ag8a.pdb             492  N--S  493
1bxsa.pdb             493  N--S  494
                               


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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