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# Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 20:38:51 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/adk.html
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#====================================
# Aligned_structures: 9
# 1: 1akea.pdb
# 2: 1aky.pdb
# 3: 1gky.pdb
# 4: 1uke.pdb
# 5: 1uky.pdb
# 6: 1zaka.pdb
# 7: 1zin.pdb
# 8: 2ak3a.pdb
# 9: 3adk.pdb
#
# Length: 317
# Identity: 7/317 ( 2.2%) (Calculated as the percentage of conserved columns in the alignment.)
# Similarity: 16/317 ( 5.0%) (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps: 170/317 ( 53.6%) (Calculated as the percentage of columns with atleast one gap.)
#===========================================ALIGNMENT START=========================================
1akea.pdb 1 ------------------MRIILLGAPGAGKGTQAQFIMEKYG--IPQISTG-------- 32
1aky.pdb 1 ----------------ESIRMVLIGPPGAGKGTQAPNLQERFH--AAHLATG-------- 34
1gky.pdb 1 -----------------SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAG 43
1uke.pdb 1 -------E-----KSK-PNVVFVLGGPGSGKGTQCANIVRDFG--WVHLSAG-------- 37
1uky.pdb 1 --------PAFSPD-Q-VSVIFVLGGPGAGKGTQCEKLVKDYS--FVHLSAG-------- 40
1zaka.pdb 1 ------A------D---PLKVMISGAPASGKGTQCELIKTKYQ--LAHISAG-------- 35
1zin.pdb 1 ------------------MNLVLMGLPGAGKGTQAEKIVAAYG--IPHISTG-------- 32
2ak3a.pdb 1 G-----------AS-ARLLRAAIMGAPGSGKGTVSSRITKHFE--LKHLSSG-------- 38
3adk.pdb 1 -MEEKLK--------K-SKIIFVVGGPGSGKGTQCEKIVQKYG--YTHLSTG-------- 40
G pg GKgT g
1akea.pdb 33 ----------DMLRAAVKSG-SELGKQA------KDIMDA-GKLVTDELVIALVKERIAQ 74
1aky.pdb 35 ----------DMLRSQIAKG-TQLGLEA------KKIMDQ-GGLVSDDIMVNMIKDELTN 76
1gky.pdb 44 EVNGKDYNFV----SVDEF--KSMIKNNEFIEWA---QFSGNYYGS---TVASVKQVSKS 91
1uke.pdb 38 ----------DLLRQEQQSG-SKDGEMI------ATMIKN-GEIVPSIVTVKLLKNAIDA 79
1uky.pdb 41 ----------DLLRAEQGRAGSQYGELI------KNCIKE-GQIVPQEITLALLRNAISD 83
1zaka.pdb 36 ----------DLLRAEIAAG-SENGKRA------KEFMEK-GQLVPDEIVVNMVKERLRQ 77
1zin.pdb 33 ----------DMFRAAMKEG-TPLGLQA------KQYMDR-GDLVPDEVTIGIVRERLSK 74
2ak3a.pdb 39 ----------DLLRDNMLRG-TEIGVLA------KTFIDQ-GKLIPDDVMTRLVLHELKN 80
3adk.pdb 41 ----------DLLRAEVSSG-SARGKML------SEIMEK-GQLVPLETVLDMLRDAMVA 82
g g
1akea.pdb 75 -EDC----RNGFLLDGFPRTIPQADAMK---EAG----INVDYVLEFDV-PDELIVDRIV 121
1aky.pdb 77 NPAC----KNGFILDGFPRTIPQAEKLD---QMLKEQGTPLEKAIELKV-DDELLVARIT 128
1gky.pdb 92 --------GKTCILD--ID-MQGVKSVK---AIP----ELNARFLFIAPPSVEDLKKRLE 133
1uke.pdb 80 ---NQ---GKNFLVDGFPRNEENNNSWEENMKDF----VDTKFVLFFDC-PEEVMTQRLL 128
1uky.pdb 84 ---NVKANKHKFLIDGFPRKMDQAISFE---RDI----VESKFILFFDC-PEDIMLERLL 132
1zaka.pdb 78 -PDAQ---ENGWLLDGYPRSYSQAMALE---TLE----IRPDTFILLDV-PDELLVERVV 125
1zin.pdb 75 -DDC----QNGFLLDGFPRTVAQAEALE---TMLADIGRKLDYVIHIDV-RQDVLMERLT 125
2ak3a.pdb 81 ---LT---QYNWLLDGFPRTLPQAEALD---RA-----YQIDTVINLNV-PFEVIKQRLT 125
3adk.pdb 83 ---KVDT-SKGFLIDGYPREVKQGEEFE---RKI----GQPTLLLYVDA-GPETMTKRLL 130
D pr R
1akea.pdb 122 GRRVHAPSGRVYHVK-FNPPKV-EGKDDVTGEELTTR----------------K--DDQE 161
1aky.pdb 129 GRLIHPASGRSYHKI-FNPPKE-DMKDDVTGEALVQR----------------S--DDNA 168
1gky.pdb 134 GRG-----------------------------------------------------TE-- 138
1uke.pdb 129 KRG------------ESS-----------------GR----------------S--DDNI 141
1uky.pdb 133 ERG------------KTS-----------------GR----------------S--DDNI 145
1zaka.pdb 126 GRRLDPVTGKIYHLK-YSPPENEEI----ASR-LTQR----------------F--DDTE 161
1zin.pdb 126 GRRICRNCGATYHLI-FHPPAK-PGVCDKCGGELYQR----------------A--DDNE 165
2ak3a.pdb 126 ARWIHPGSGRVYNIE--FN----------------PPKTMGIDDLTGEPLVQRE--DDRP 165
3adk.pdb 131 KRG------------ETS-----------------GR----------------VDD--NE 143
R
1akea.pdb 162 ETVRKRLVEYHQMTAPLIGYYSKEAEAGNTK-YAKVDGTKPVAEVRADLEKILG------ 214
1aky.pdb 169 DALKKRLAAYHAQTEPIVDFYKKTG-----I-WAGVDASQPPATVWADILNKLGKN---- 218
1gky.pdb 139 --TEESINKRLSAAQAELAYAETG------AHDKVIV-NDDLDKAYKELKDFIFAEK--- 186
1uke.pdb 142 ESIKKRFNTFNVQTKLVIDHYNKFD-----K-VKIIPANRDVNEVYNDVENLFKSMGF-- 193
1uky.pdb 146 ESIKKRFNTFKETSMPVIEYFETKS-----K-VVRVRCDRSVEDVYKDVQDAIRDSL--- 196
1zaka.pdb 162 EKVKLRLETYYQNIESLLSTY--EN-----I-IVKVQGDATVDAVFAKIDELLGSILEKK 213
1zin.pdb 166 ATVANRLEVNMKQMKPLVDFYEQKG-----Y-LRNINGEQDMEKVFADIRELLGGLAR-- 217
2ak3a.pdb 166 ETVVKRLKAYEAQTEPVLEYYRKKG-----V-LETFSGTE-TNKIWPHVYAFLQTKLP-- 216
3adk.pdb 144 ETIKKRLETYYKATEPVIAFYEKRG-----I-VRKVNAEGSVDDVFSQVCTHLDTLK--- 194
r
1akea.pdb -----------------
1aky.pdb -----------------
1gky.pdb -----------------
1uke.pdb -----------------
1uky.pdb -----------------
1zaka.pdb 214 NEMVSST---------- 220
1zin.pdb -----------------
2ak3a.pdb 217 -------QRSQETSVTP 226
3adk.pdb -----------------
#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue = Acidic,{D,E}
# Magenta = Basic,{K,R} and
# Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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