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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 00:20:22 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/adeno_fiber.html
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#====================================
# Aligned_structures: 3
#   1: 1knb.pdb
#   2: 1noba.pdb
#   3: 1qhva.pdb
#
# Length:        205
# Identity:       69/205 ( 33.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    143/205 ( 69.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           29/205 ( 14.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1knb.pdb                1  --------N---DKLTLWTTPAPSPNCRLNAEKDAKLTLVLTKCGSQILATVSVLAVKGS   49
1noba.pdb               1  ---------TPYDPLTLWTTPDPPPNCSLIQELDAKLTLCLTKNGSIVNGIVSLVGVKGN   51
1qhva.pdb               1  AITIGNKND---DKLTLWTTPDPSPNCRIHSDNDCKFTLVLTKCGSQVLATVAALAVSGD   57
                                       DkLTLWTTPdPsPNCrl  e DaKlTLvLTKcGSqvlatVs laVkG 

1knb.pdb               50  -LAPI-SGTVQSAHLIIRFDENGVLLNN--SFLDP-EYWNFRNGDLTEGTAYTNAVGFMP  104
1noba.pdb              52  -LLNI-QSTTTTVGVHLVFDEQGRLITSTPTALVPQASWGYRQGQSVSTNTVTNGLGFMP  109
1qhva.pdb              58  LSSMTG--TVASVSIFLRFDQNGVLMEN--SSLKK-HYWNFRNGNSTNANPYTNAVGFMP  112
                            l  i   Tv sv   lrFDenGvL  n  s L p  yWnfRnG st  n yTNavGFMP

1knb.pdb              105  NLSAYPKSHGKTAKSNIVSQVYLNGDKTKPVTLTITLNG--TQETGDTTPS-AYSMSFSW  161
1noba.pdb             110  NVSAYPRPNASEAKSQMVSLTYLQGDTSKPITMKVAFNG--I-TS-----LNGYSLTFMW  161
1qhva.pdb             113  NLLAYPKTQSQTAKNNIVSQVYLHGDKTKPMILTITLNGTSESTE-TSEVS-TYSMSFTW  170
                           NlsAYPk    tAKsniVSqvYL GDktKP tltitlNG    t      s  YSmsF W

1knb.pdb              162  DWSGHNYINEIFATSSYTFSYIAQE  186
1noba.pdb             162  SGLS-NYINQPFSTPSCSFSYITQE  185
1qhva.pdb             171  SWESGKYTTETFATNSYTFSYIAQE  195
                           sw s nYine FaT SytFSYIaQE


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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