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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 00:08:29 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/VHS.html
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#====================================
# Aligned_structures: 2
#   1: 1dvpa.pdb
#   2: 1elka.pdb
#
# Length:        157
# Identity:       50/157 ( 31.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     50/157 ( 31.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           16/157 ( 10.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1dvpa.pdb               1  M--------FRSSFCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMN   52
1elka.pdb               1  -SDFLLGNPFSSPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIV   59
                                    F S      E AT       DW     ICD IN     PK A  A KK   

1dvpa.pdb              53  -SPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFS-SFLE--STPHENVRQKMLE  108
1elka.pdb              60  GNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLN  119
                              N H     L VLE  VKNCG   H  V      E            P   V  K L 

1dvpa.pdb             109  LVQTWAYAFRSSDKYQAIKDTMTILKAKGHTFPELRE  145
1elka.pdb             120  LIQSWADAFRSSPDLTGVVTIYEDLRRKGLEFPM---  153
                           L Q WA AFRSS            L  KG  FP    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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