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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:48:02 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/TrkA-N.html
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#====================================
# Aligned_structures: 2
#   1: 1id1a.pdb
#   2: 1lnqa.pdb
#
# Length:        138
# Identity:       28/138 ( 20.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     28/138 ( 20.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           10/138 (  7.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1id1a.pdb               1  HRKDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSND   60
1lnqa.pdb               1  ---RHVVICGWSESTLECLRELR--GSEVFVLAEDE-NVRKKVLR-SG--ANFVHGDPTR   51
                               H   CG S         L   G  V V         K      G  A    GD   

1id1a.pdb              61  SSVLKKAGIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIKMVHPD  120
1lnqa.pdb              52  VSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGAD  111
                            S L KA     RA       D       L        V          N     M   D

1id1a.pdb             121  IILSPQLFGSEILARVLN  138
1lnqa.pdb             112  QVISPFVISGRLMSRS-I  128
                              SP         R   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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