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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:31:15 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/TIR.html
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#====================================
# Aligned_structures: 2
#   1: 1fyva.pdb
#   2: 1fywa.pdb
#
# Length:        169
# Identity:       66/169 ( 39.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     66/169 ( 39.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           37/169 ( 21.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1fyva.pdb               1  NIPLEELQRNL---QFHAFISYSGHDSFWVKNELLPNLEKEGQ----ICLHERNFVPGKS   53
1fywa.pdb               1  -----------SRNIYDAFVSYSERDAYWVENL-VQELENF--NPPFKLLHKRDFIPGKW   46
                                            AF SYS  D  WV N     LE          LH R F PGK 

1fyva.pdb              54  IVENIITCIEKSYKSIFVLSPNFVQSEWCHYELYFAHHNLF---HEGSNSLILILLEPIP  110
1fywa.pdb              47  IIDNIIDSIEKSHKTVFVLSENFVKSEWKYELD----FSHFRLFDENNDAAILILLEPIE  102
                           I  NII  IEKS K  FVLS NFV SEW            F    E     ILILLEPI 

1fyva.pdb             111  QYSIPSSYHKLKSLARRTYLEWPKEKSKRGLFWANLRAAINIKLTEQAK  159
1fywa.pdb             103  KKAIPQRF-KLRKINTKTYLEWP-DEAQREGFWVNLRAAIKS-------  142
                              IP    KL      TYLEWP     R  FW NLRAAI         


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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