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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 16:53:06 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/TIG.html
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#====================================
# Aligned_structures: 6
#   1: 1cgt.pdb
#   2: 1ciu.pdb
#   3: 1cyg.pdb
#   4: 1d3ca.pdb
#   5: 1pama.pdb
#   6: 1qhpa.pdb
#
# Length:         89
# Identity:       22/ 89 ( 24.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     31/ 89 ( 34.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            9/ 89 ( 10.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1cgt.pdb                1  ETTPTIGHVGPVMGKPGNVVTIDGRGFGSTKGTVYFGTTAVTGAAITSWEDTQIKVTIPS   60
1ciu.pdb                1  SNSPLIGHVGPTMTKAGQTITIDGRGFGTTSGQVLFGSTAG---TIVSWDDTEVKVKVPS   57
1cyg.pdb                1  ESTPIIGHVGPMMGQVGHQVTIDGEGFGTNTGTVKFGTTAA---NVVSWSNNQIVVAVPN   57
1d3ca.pdb               1  -ATPTIGHVGPMMAKPGVTITIDGRGFGSSKGTVYFGTTAVSGADITSWEDTQIKVKIPA   59
1pama.pdb               1  -TTPIIGNVGPMMAKPGVTITIDGRGFGSGKGTVYFGTTAVTGADIVAWEDTQIQVKIPA   59
1qhpa.pdb               1  ASAPQIGSVAPNMGIPGNVVTIDGKGFGTTQGTVTFGGVTA---TVKSWTSNRIEVYVPN   57
                              P IG VgP M   G   TIDG GFG   GtV FG ta       sW    i V  P 

1cgt.pdb               61  VAAGNYAVKVAASG--VNSNAYNNFTI--   85
1ciu.pdb               58  VTPGKYNISLKTSSGATSNTYNNINI---   83
1cyg.pdb               58  VSPGKYNITVQSSSGQTSAAYDNFEV---   83
1d3ca.pdb              60  VAGGNYNIKVANAA-GTASNVYDNFEVLS   87
1pama.pdb              60  VPGGIYDIRVANAA-GAASNIYDNFEVL-   86
1qhpa.pdb              58  MAAGLTDVKVTAGG--VSSNLYSYNI---   81
                           v  G y   v                   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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