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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:25:33 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/T-box.html
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#====================================
# Aligned_structures: 2
#   1: 1h6fa.pdb
#   2: 1xbra.pdb
#
# Length:        192
# Identity:       91/192 ( 47.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     91/192 ( 47.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           16/192 (  8.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1h6fa.pdb               1  DPKVHLEAKELWDQFHKRGTEMVITKSGRRMFPPFKVRCSGLDKKAKYILLMDIIAADDC   60
1xbra.pdb               1  ELKVSLEERDLWTRFKELTNEMIVTKNGRRMFPVLKVSMSGLDPNAMYTVLLDFVAADNH   60
                             KV LE   LW  F     EM  TK GRRMFP  KV  SGLD  A Y  L D  AAD  

1h6fa.pdb              61  RYKFHNSRWMVAGKADPEMPKR-MYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFT  119
1xbra.pdb              61  RWKYVNGEWVPGGKPE-PQAPSCVYIHPDSPNFGAHWMKDPVSFSKVKLTNKM-NGGGQI  118
                           R K  N  W   GK          YIHPDSP  G  WM   V F K KLTN      G  

1h6fa.pdb             120  ILNSMHKYQPRFHIVRANDILKL-PY-STFRTYLFPETEFIAVTAYQNDKITQLKIDNNP  177
1xbra.pdb             119  MLNSLHKYEPRIHIVRV------GGTQRMITSHSFPETQFIAVTAYQNEEITALKIKHNP  172
                            LNS HKY PR HIVR                  FPET FIAVTAYQN  IT LKI  NP

1h6fa.pdb             178  FAKGFRD-----  184
1xbra.pdb             173  FAKAFLDAKERN  184
                           FAK F D     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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