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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 12:09:15 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Sulfotransfer.html
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#====================================
# Aligned_structures: 5
#   1: 1aqua.pdb
#   2: 1cjma.pdb
#   3: 1efha.pdb
#   4: 1fmja.pdb
#   5: 1nsta.pdb
#
# Length:        413
# Identity:        8/413 (  1.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     43/413 ( 10.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          243/413 ( 58.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1aqua.pdb               1  EYY--EVFGEF-R--------------------------------GVLMDKRFTKYWEDV   25
1cjma.pdb               1  ---SRPPLEYV-K--------------------------------GVPLIKYFAEALGPL   24
1efha.pdb               1  ------DFLWF-EGIAF--------------PTMGFR------------SETL---RKVR   24
1fmja.pdb               1  -----------PFPYEFRELNPEEDKLVKANLGAFPTTYVKLGPKGYMVYRPYLKDAANI   49
1nsta.pdb               1  -----------------------------------DPLWQDPC-----CDR---------   11
                                                                                       

1aqua.pdb              26  EMFLAR-PDDLVIATYPKSGTTWISEVVYMIYKEG-------------DAI-FNRIPYLE   70
1cjma.pdb              25  QSFQAR-PDDLLINTYPKSGTTWVSQILDMIYQ---------------------RVPFLE   62
1efha.pdb              25  DEFVIR-DEDVIILTYPKSGTNWLAEILCLMHSKGDAKWI------QSVPI-WERSPWVE   76
1fmja.pdb              50  YNMPLR-PTDVFVASYQRSGTTMTQELVWLIENDLNFEAA------K-TYM-SLRYIYLD  100
1nsta.pdb              12  ------FP-KLLIIGPQKTGTTALYLFLGMH---------PDLSSNY-PSSETFEEIQFF   54
                                  p d  i  y ksGTt                                r     

1aqua.pdb              71  CR---NED---------------------------LINGIKQLKEK-E---SPRIVKTHL   96
1cjma.pdb              63  VN---DPG---------------------------EP---ETLKDT-P---PPRLIKSHL   85
1efha.pdb              77  SE-----------------------------------IGYTALSET-E---SPRLFSSHL   97
1fmja.pdb             101  GFMIYDPEKQEEYNDILPNPENLDMERYLGLLEYSSRPGSSLLAAVPPT--EKRFVKTHL  158
1nsta.pdb              55  NG---------------HNYHK--------GID----WYMEFFP-----ISDFYFEKSAN   82
                                                                     l          r  k hl

1aqua.pdb              97  P---PKLLPASFWE--KNCKMIYLCRNAKDVAVSYYYFLLMIT--SY-PNP-KSFSEFVE  147
1cjma.pdb              86  P---LALLPQTLLD--QKVKVVYVARNPKDVAVSYYHFHRMEK--AH-PEP-GTWDSFLE  136
1efha.pdb              98  P---IQLFPKSFFS--SKAKVIYLMRNPRDVLVSGYFFWKNMK--FI-KKP-KSWEEYFE  148
1fmja.pdb             159  P---LSLMPPNML---DTVKMVYLARDPRDVAVSSFHHARLLYL--LNK--QSNFKDFWE  208
1nsta.pdb              83  YFDSEVAPR-RAAALLPKAKVLTILINPADRAYSWYQHQRAHDDPVA-L--KYTFHEVIT  138
                           p     l p          K  y  rnp DvavS y                       e

1aqua.pdb             148  K-------------FMQGQVPYGSWYDHVKAWWEKSKNSRVLFMFYEDMKEDIRREVVKL  194
1cjma.pdb             137  K-------------FMAGEVSYGSWYQHVQEWWELSRTHPVLYLFYEDMKENPKREIQKI  183
1efha.pdb             149  W-------------FCQGTVLYGSWFDHIHGWMPMREEKNFLLLSYEELKQDTGRTIEKI  195
1fmja.pdb             209  M-------------FHRGLYTLTPYFEHVKEAWAKRHDPNMLFLFYEDYLKDLPGCIARI  255
1nsta.pdb             139  AGSDASSKLRALQNRCLV---PGWYATHIERWLSAYHANQILVLDGKLLRTEPAKVMDMV  195
                                         f  g    g    H   w         L l ye             

1aqua.pdb             195  IEFLERKPSAE--LVDRIIQHTSFQEMKNNPSTNYTMM-----PEEM---MNQK---VSP  241
1cjma.pdb             184  LEFVGRSL----------------------------------------------------  191
1efha.pdb             196  CQFLGKTLEPE--ELNLILKNSSFQSMKENKMSNY-------SL--L---SVDYVVDQ--  239
1fmja.pdb             256  ADFLGKKLSEE--QIQRLCEHLNFEKFKNNGAVNMEDY-----REIG---ILAD---GEH  302
1nsta.pdb             196  QKFLGVTN---TIDYHKTLA-FDPKKG-----------FWCQLLEGGKTKCLGK---S--  235
                             Flg                                                       

1aqua.pdb             242  FMRKGIIGDWKNHFPEALRERFDEHYKQQMKDC-----TVKFRME--------  281
1cjma.pdb             192  -------GDWKTTFTVAQNERFDADYAEKMAGC-----SLSFRS---------  223
1efha.pdb             240  LLRKGVSGDWKNHFTVAQAEDFDKLFQEKMADL-----PRKLA---AALE---  281
1fmja.pdb             303  FIRKGKAGCWRDYFDEEMTKQAEKWIKDNLKDT-----DLRYPNM--------  342
1nsta.pdb             236  KGRKYP------EMDLDSRAFLKDYYRDHNIELSKLLYKMGQTLPTWLREDLQ  282
                                        f                                       


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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