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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:19:29 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Staphylokinase.html
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#====================================
# Aligned_structures: 2
#   1: 1qqra.pdb
#   2: 2sak.pdb
#
# Length:        157
# Identity:       14/157 (  8.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     14/157 (  8.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           55/157 ( 35.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1qqra.pdb               1  IQNQ-----AKSVDVEYTVQFTPLNP-DDDFRPGLKLTKLLKTLAIGDTITSQELLAQAQ   54
2sak.pdb                1  ----SYFEPT-GPYLMVNVTGVDSK-GNE-LL--SPHYVEFPIKP-GTTLTKEKIEYYVE   50
                                             V                           G T T         

1qqra.pdb              55  SILNKN-HPGYTIYERDS-SIVTHDND--------IFRTILPMDQEFTYRVKNREQAYRI  104
2sak.pdb               51  WALDATAYKEFRVVELDPSAKIEVT--YYDKNKKKEETKSFPIT-EKGFVVPDLS-----  102
                             L           E D                        P   E    V         

1qqra.pdb             105  NKKSGLNE---EINNTDLISEKYYVLKKGEKPYDPFD  138
2sak.pdb              103  --------EHIK-NPGFNLITKVVIEKK---------  121
                                        N       K    KK         


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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