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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:09:52 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/S-AdoMet_synt_NC.html
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#====================================
# Aligned_structures: 2
#   1: 1mxb.pdb
#   2: 1qm4a.pdb
#
# Length:        381
# Identity:      211/381 ( 55.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    211/381 ( 55.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           17/381 (  4.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1mxb.pdb                1  AKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSA   60
1qm4a.pdb               1  GAFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSMA   60
                               FTSESV EGHPDKI DQISDAVLDA L QDP A VACET  KTGMVL  GEIT  A

1mxb.pdb               61  WVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDRADPLEQGAGDQGLMFGYA  120
1qm4a.pdb              61  MIDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSP-----EDVGAGDQGLMFGYA  115
                             D     R T   IGY  S  GFD   C VL A   QSP        GAGDQGLMFGYA

1mxb.pdb              121  TNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQYDD----GKIVGIDA  176
1qm4a.pdb             116  TDETEECMPLTIVLAHKLNTRMADLRRSGVLPWLRPDSKTQVTVQYVQDNGAVIPVRVHT  175
                           T ET   MP  I  AH L  R A  R  G LPWLRPD K QVT QY         V    

1mxb.pdb              177  VVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKFFINPTGRFVIGGPMGDCGLT  236
1qm4a.pdb             176  IVISVQHNEDITLEAMREALKEQVIKAVVPAKYLDEDTIYHLQPSGRFVIGGPQGDAGVT  235
                            V S QH E I      EA  E  IK   PA  L   T     P GRFVIGGP GD G T

1mxb.pdb              237  GRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAI  296
1qm4a.pdb             236  GRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVLVQVSYAI  295
                           GRKIIVDTYGG   HGGGAFSGKD  KVDRSAAYAAR VAK  V AGL  R   QVSYAI

1mxb.pdb              297  GVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLLHPIYKETAAYGHFGR  356
1qm4a.pdb             296  GVAEPLSISIFTYGTSKKTERELLEVVNKNFDLRPGVIVRDLDLKKPIYQKTACYGHFGR  355
                           GVAEP SI   T GT K     L   V   FDLRP      LDL  PIY  TA YGHFGR

1mxb.pdb              357  EHFPWEKTDKAQLLRDAAGLK  377
1qm4a.pdb             356  SEFPWEVPKKLVF--------  368
                             FPWE   K           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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