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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 04:10:40 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Ribosomal_L7Ae.html
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#====================================
# Aligned_structures: 3
#   1: 1cn9a.pdb
#   2: 1e7ka.pdb
#   3: 1jj2f.pdb
#
# Length:        127
# Identity:        9/127 (  7.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     49/127 ( 38.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           26/127 ( 20.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1cn9a.pdb               1  --APVKS--------QESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANT--P   48
1e7ka.pdb               1  ADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPL   60
1jj2f.pdb               1  ---PVYVDFDVPADLEDDALEALEVARDTGAVKKGTNETTKSIERGSAELVFVAEDVQPE   57
                              pvk             l  l      g   kG nettKsl rG seli  Aad    

1cn9a.pdb              49  VLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVSILEA--GDS--D---ILT  101
1e7ka.pdb              61  -EIILHLPLLCEDKNVPYVFVRS-KQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQ  118
1jj2f.pdb              58  -EIVMHIPELADEKGVPFIFVEQ-QDDLGHAAGLEVGSAAAAVTDA--GAAATVLEEIAD  113
                            ei  hlp la  k vp  fv      LG A G    v a svt a  g        I  

1cn9a.pdb             102  TLA----  104
1e7ka.pdb             119  SIERLLV  125
1jj2f.pdb             114  KVEELR-  119
                             e    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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