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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:03:12 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Ribosomal_L14.html
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#====================================
# Aligned_structures: 2
#   1: 1jj2j.pdb
#   2: 1whi.pdb
#
# Length:        136
# Identity:       46/136 ( 33.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     46/136 ( 33.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           18/136 ( 13.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1jj2j.pdb               1  MEALGADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRHPKAGLGDKITVSVTKG   60
1whi.pdb                1  ----------MIQQESRLKVADNSGAREVLVIKVLGG---SGR-RYANIGDVVVATVKDA   46
                                          S    ADN GARE  VI V G      R   A  GD     V   

1jj2j.pdb              61  TPE---MRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREV  117
1whi.pdb               47  TPGGVVKKGQVVKAVVVRTKRGVRRPDGSYIRFDENACVIIRDDKSPRGTRIFGPVAREL  106
                           TP       QV  AVVVR     RRPDG    F  NA VI      PRGT   GP ARE 

1jj2j.pdb             118  AQRFGSVASAATMIV-  132
1whi.pdb              107  RDKDFMKIISLAPEVI  122
                                         V 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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