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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:59:52 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/RhoGEF.html
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#====================================
# Aligned_structures: 2
#   1: 1by1a.pdb
#   2: 1dbh.pdb
#
# Length:        245
# Identity:       26/245 ( 10.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     26/245 ( 10.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           77/245 ( 31.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1by1a.pdb               1  MKGFDTTAIN-KSYYNVVLQNILETENEYSKELQTVLSTYLRPLQTSE-KLSSANISYL-   57
1dbh.pdb                1  ----------EQ-TYYDLVKAF-AEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIF   48
                                         Y             Y  EL         P        S        

1by1a.pdb              58  MGNLEEICSFQQMLVQSLEECTKLPEAQ-------QRVGGCFL-----NLMPQMKTLYLT  105
1dbh.pdb               49  S-RIVDIHELSVKLLGHIEDTVE-----TDEGSPHPLVGSCFEDLAEELAFDPYESYARD  102
                                 I      L    E                  VG CF                  

1by1a.pdb             106  YCA--NHPSAVNVLTEHSEELGEFMETKGASSPGILVL----TTGL----SKPFMRLDKY  155
1dbh.pdb              103  ILRPGFHDRFLSQLSK--PGAALYLQS--IGEGF----KEAVQYVLPRLLLAPVYHCLHY  154
                                 H      L                               L      P      Y

1by1a.pdb             156  PTLLKELERHMEDY---HTDRQDIQKSMAAFKN---LSAQCQEVR-----KRKELELQIL  204
1dbh.pdb              155  FELLKQLEEK----SEDQEDKECLKQAITALLNVQSGE-KICSKSLAKRRLSESA-----  204
                             LLK LE           D         A  N                           

1by1a.pdb             205  TEAIR  209
1dbh.pdb                   -----     
                                


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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