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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:55:13 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/QRPTase.html
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#====================================
# Aligned_structures: 2
#   1: 1qapa.pdb
#   2: 1qpoa.pdb
#
# Length:        299
# Identity:      116/299 ( 38.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    116/299 ( 38.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           25/299 (  8.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1qapa.pdb               1  DDRRDAL--LERINLDIPAAVAQALREDLGGEVDAG--NDITA-QLLPADTQAHATVITR   55
1qpoa.pdb               1  -------GLSDWELAAARAAIARGLDEDLR------YGPDVTTLATVPASATTTASLVTR   47
                                             AA A  L EDL          D T     PA     A   TR

1qapa.pdb              56  EDGVFCGKRWVEEVFIQLAGDD-VRLTWHVDDGDAIHANQTVFELQGPARVLLTGERTAL  114
1qpoa.pdb              48  EAGVVAGLDVALLTLNEVLGTNGYRVLDRVEDGARVPPGEALMTLEAQTRGLLTAERTML  107
                           E GV  G            G    R    V DG           L    R LLT ERT L

1qapa.pdb             115  NFVQTLSGVASEVRRYVGLLAGTQTQLLDTRKTLPGLRTALKYAVLCGGGANHRLGLTDA  174
1qpoa.pdb             108  NLVGHLSGIATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAVRTGGGVNHRLGLGDA  167
                           N V  LSG A      V    GT     DTRKTLPGLR   KYAV  GGG NHRLGL DA

1qapa.pdb             175  FLIKENHIIASGSVRQAVEKAFWLHPDVPVEVEVENLDELDDALKAGADIIMLDNFNTDQ  234
1qpoa.pdb             168  ALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPEKPELILLDNFAVWQ  227
                            LIK NH  A GSV  A        PD P EVEV  L  LD  L      I LDNF   Q

1qapa.pdb             235  MREAVKRVN---GQARLEVSGN-VTAETLREFAETGVDFISVGALTKHVRALDLSMRFC  289
1qpoa.pdb             228  TQTAVQRRDSRAPTVMLESSG-GLSLQTAATYAETGVDYLAVGALTHSVRVLDIGLDM-  284
                              AV R         LE SG      T    AETGVD   VGALT  VR LD      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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