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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 09:17:43 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Pro_CA.html
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#====================================
# Aligned_structures: 4
#   1: 1ddza1.pdb
#   2: 1ddza2.pdb
#   3: 1ekja.pdb
#   4: 1i6pa.pdb
#
# Length:        284
# Identity:       33/284 ( 11.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     92/284 ( 32.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          100/284 ( 35.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ddza1.pdb              1  ----------------VMSDLEKKFIELEAKLVAQPAGQAMPGKSNIFANNEAWRQEMLK   44
1ddza2.pdb              1  ----NPNAPLVQVTKGGESELDSTMEKLTAELVQQTPGKLKEGANRVFVNNENWRQKMLK   56
1ekja.pdb               1  -EAS----------------------------------------ERIKTGFLHFKKEKYD   19
1i6pa.pdb               1  KDID-----------------------------------------TLISNNALWSKMLVE   19
                                                                            nn  w      

1ddza1.pdb             45  QDPEFFNRLANG-QSPEYLWIGCADSRVPANQLLDLPAGEVFVHRNIANQCIH-S---DI   99
1ddza2.pdb             57  QDPQFFSNLAHT-QTPEILWIGCADSRVPANQIINLPAGEVFVHRNIANQCIH-S---DM  111
1ekja.pdb              20  KNPALYGELAKGQ-SPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANLVPPYDQAKYA   78
1i6pa.pdb              20  EDPGFFEKLAQA-QKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIH-T---DL   74
                            dP ff  LA     P  lwigC DSRVpa     l  GE FVhRN AN  ih     d 

1ddza1.pdb            100  SFLSVLQYAVQYLKVKHILVCGHYGCGGAKAALGDSRLG-----L---IDNWLRHIRDVR  151
1ddza2.pdb            112  SFLSVLQYAVQYLKVKRVVVCGHYACGGCAAALGDSRLG-----L---IDNWLRHIRDVR  163
1ekja.pdb              79  GTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYSTDFIEEWVKIGLPAKAKV  138
1i6pa.pdb              75  NCLSVVQYAVDVLEVEHIIICGHYGCGGVQAAVENPELG-----L---INNWLLHIRDIW  126
                             lsv qYAV  LkV  i vcGHy CGG  aal    lG     l   i nwl hird  

1ddza1.pdb            152  RMNAKYLDKCKDGDEELNRLIELNVLEQVHNVCATSIVQDAWDAGQELTVQGVVYGVGDG  211
1ddza2.pdb            164  RHNQAELSRITDPKDSLNRLIEINVLEQMHNVCATSIVQDAWDAGQELEVQGVVYGVGDG  223
1ekja.pdb             139  KAQH---GD-APFAELCTHCEKEAVNASLGNLLTYPFVREGLVNK-TLALKGGYYDFVKG  193
1i6pa.pdb             127  FKHSSLLGEMPQ-ERRLDTLCELNVMEQVYNLGHSTIMQSAWKRGQKVTIHGWAYGIHDG  185
                                           l  l e nV eq  N     ivq aw  g  l   G  Yg  dG

1ddza1.pdb            212  KLRDLGV-VVNS-------SDDIS---KFYRTKSDSGALKAG--  242
1ddza2.pdb            224  KLRDMGV-VAKA-------NDDIG--------------------  239
1ekja.pdb             194  SFELWGL-E--F-------GLSSTFSV-----------------  210
1i6pa.pdb             186  LLRDLDVTATNRETLEQRY--------RHGIS-------NLKLK  214
                            lrd gv                                     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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