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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:09:12 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Peptidase_M10A.html
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#====================================
# Aligned_structures: 2
#   1: 1kapp.pdb
#   2: 1sat.pdb
#
# Length:        487
# Identity:      257/487 ( 52.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    257/487 ( 52.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           36/487 (  7.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1kapp.pdb               1  GRSDAYTQVDNFLHAYARGGDELVNGHPSYTVDQAAEQILREQASWQKAPGD--SVLTLS   58
1sat.pdb                1  ---TGYDAVDDLLHYHERGNGIQINGKDSFSNEQAGLFITRENQTWN-GYKVFGQPVKLT   56
                                Y  VD  LH   RG     NG  S    QA   I RE   W            L 

1kapp.pdb              59  YSFLTKPNDFFNTPWKYVSDI--YSLGKFSAFSAQQQAQAKLSLQSWSDVTNIHFVDAGQ  116
1sat.pdb               57  FSFPDY-KFSST---------NVAGDTGLSKFSAEQQQQAKLSLQSWADVANITFTEVAA  106
                            SF                          S FSA QQ QAKLSLQSW DV NI F     

1kapp.pdb             117  GDQGDLTFGNFSSSVG-------GAAFAFLPDVPD----ALKGQSWYLINSSYSANVNPA  165
1sat.pdb              107  GQKANITFGNYSQD-RPGHYDYGTQAYAFLPNTI-WQGQDLGGQTWYNVN--QSNVKHPA  162
                           G     TFGN S             A AFLP         L GQ WY  N   S    PA

1kapp.pdb             166  NG-NYGRQTLTHEIGHTLGLSHPGDYNAGEGDPTYADATYAEDTRAYSVMSYWEEQNTGQ  224
1sat.pdb              163  -TEDYGRQTFTHEIGHALGLSHPGDYNAGEGDPTYADVTYAEDTRQFSLMSYWSETNTGG  221
                               YGRQT THEIGH LGLSHPGDYNAGEGDPTYAD TYAEDTR  S MSYW E NTG 

1kapp.pdb             225  DFKGAYSSAPLLDDIAAIQKLYGANLTTRTGDTVYGFNSNTERDFYSATSSSSKLVFSVW  284
1sat.pdb              222  DNGGHYAAAPLLDDIAAIQHLYGANLSTRTGDTVYGFNSNTGRDFLSTTSNSQKVIFAAW  281
                           D  G Y  APLLDDIAAIQ LYGANL TRTGDTVYGFNSNT RDF S TS S K  F  W

1kapp.pdb             285  DAGGNDTLDFSGFSQNQKINLNEKALSDVGGLKGNVSIAAGVTVENAIGGSGSDLLIGND  344
1sat.pdb              282  DAGGNDTFDFSGYTANQRINLNEKSFSDVGGLKGNVSIAAGVTIENAIGGSGNDVIVGNA  341
                           DAGGNDT DFSG   NQ INLNEK  SDVGGLKGNVSIAAGVT ENAIGGSG D   GN 

1kapp.pdb             345  VANVLKGGAGNDILYGGLGADQLWGGAGADTFVYGDIAESSAAAPDTLRDFVSGQDKIDL  404
1sat.pdb              342  ANNVLKGGAGNDVLFGGGGADELWGGAGKDIFVFSAASDSAPGASDWIRDFQKGIDKIDL  401
                             NVLKGGAGND L GG GAD LWGGAG D FV      S   A D  RDF  G DKIDL

1kapp.pdb             405  SGLDAFVNGGLVLQYVDAFAGKAGQAILSYDAASKAGSLAIDFSGDAHADFAINLIGQAT  464
1sat.pdb              402  SFFDKEANSSSFIHFVDHFSGTAGEALLSYNASSNVTDLSVNIGGHAAPDFLVKIVGQVD  461
                           S  D   N       VD F G AG A LSY A S    L     G A  DF     GQ  

1kapp.pdb             465  QADIVV-  470
1sat.pdb              462  VATDFIV  468
                            A     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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