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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 03:41:53 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/PAS.html
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#====================================
# Aligned_structures: 3
#   1: 1d06a.pdb
#   2: 1drma.pdb
#   3: 3pyp.pdb
#
# Length:        155
# Identity:       10/155 (  6.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     70/155 ( 45.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           60/155 ( 38.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1d06a.pdb               1  -------GSHMLETEDVVRARDAHLRSILDTVPDATVVSATDGTIVSFNAAAVRQFGYAE   53
1drma.pdb               1  -------------------------------IPDAMIVIDGHGIIQLFSTAAERLFGWSE   29
3pyp.pdb                1  MEHVAFG----SE-DIENTLAKM-DDGQLDGLAFGAIQLDGDGNILQYNAAEGDITGRDP   54
                                                           pda iv dgdG I  fnaAa r fG  e

1d06a.pdb              54  EEVIGQNLRI-----LMPEPYRHEHDGYLQRYMATGEKRIIGIDRVVSGQRKDGSTFPMK  108
1drma.pdb              30  LEAIGQNVNI-----LMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRDGTTFPMH   84
3pyp.pdb               55  KQVIGKNFFKDVAPCTD-SP---EFYGKFKEGVASGN---LNTMFEYTFDY-QMTPTKVK  106
                            evIGqN  i     lm eP   ehdgy  ry atg    igi r vtg r dgttfpmk

1d06a.pdb             109  LAVGEMRSGGERFFTGFIRDLT-------------  130
1drma.pdb              85  LSIGEMQSGGEPYFTGFVRDLTEHQQTQARLQELQ  119
3pyp.pdb              107  VHMKKALS--GDSYWVFVKRV--------------  125
                           l  gem S  e  ftgFvrdl              


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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