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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:46:42 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/PAP2.html
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#====================================
# Aligned_structures: 2
#   1: 1qhba.pdb
#   2: 1qi9a.pdb
#
# Length:        661
# Identity:      164/661 ( 24.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    164/661 ( 24.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          172/661 ( 26.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1qhba.pdb               1  GIPADNLQ---------------SRAKASFDTRVAAAELALAR-GAVPSFANGEELLYRN   44
1qi9a.pdb               1  --------TCSTSDDADDPTPPNERDDEAFASRVAAAKRELEGTGTVCQINNGE-T-D--   48
                                                   R    F  RVAAA   L   G V    NGE      

1qhba.pdb              45  SETGDPSFIGSFTKGLPHDDNGAIIDPDDFLAFVRAINSGDEKEIAALTLGPARDPETGL  104
1qi9a.pdb              49  -------LAAKFHKSLPHDDLGQV-DADAFAALEDCILNGDLSICEDVPVG---------   91
                                      F K LPHDD G   D D F A    I  GD         G         

1qhba.pdb             105  PIWRSDLANSLDLEVRGWENSSAGLTFDLEGPDAQSVAMPPAPVLTSPELIAEMAELYLM  164
1qi9a.pdb              92  ----NSEG----DPVGRLVNPTAAFAIDISGPAFSATTIPPVPTLPSPELAAQLAEVYWM  143
                                         V    N  A    D  GP       PP P L SPEL A  AE Y M

1qhba.pdb             165  ALGRDIEFSEFDSPKNAAFIRSAIERLNGLEWFNTPAKLGDPPAE-IRRRRG----E-VT  218
1qi9a.pdb             144  ALARDVPFMQYGT--D-DITVTAAANLAGMEGFP-----------NLDAVSIGSDGTVDP  189
                           AL RD  F              A   L G E F                           

1qhba.pdb             219  VGNLFRGILPGSEVGPYLSQFIIVGSKQIGSATVGNKTLVSPNAADEFDGEIAYG-SITI  277
1qi9a.pdb             190  LSQLFRATFVGVETGPFISQLLV-------------------------NSFTID-SITVE  223
                              LFR    G E GP  SQ                                        

1qhba.pdb             278  SQRVRIATPGRDFMTD--LKVFLDVQDA-ADFRG-FESYEPGARLIRTIRDLATWVHFDS  333
1qi9a.pdb             224  P--KQETFAP--DVNYMVDFDEWLNIQNGGPP-AGPELLDDELRFVRNARDLARVTFTDN  278
                                                               E      R  R  RDLA     D 

1qhba.pdb             334  LYEAYLNACLILLANGVP------FDPNLPFQQEDKLDNQDVFVNFGSAHV----LSLVT  383
1qi9a.pdb             279  INTEAYRGALILLGLDAFNRAGVNGPF----IDI---DRQAGFVNFG----ISHYF-RLI  326
                                    LILL                        D Q  FVNFG             

1qhba.pdb             384  EVATRALKAVRYQKFNIHRRLRPEATGGLISVNKNAFLKSES-VFPEVDVLVEELSSILD  442
1qi9a.pdb             327  GAAELAQRSSWYQKWQVHRFARPEALGGTLHLTIKG----ELNADF-DLSLL-ENAELLK  380
                             A  A     YQK   HR  RPEA GG            E         L  E    L 

1qhba.pdb             443  DSASSNEKQNIADGDVSPGKSFLLPMAFAEGSPFHPSYGSGHAVVAGACVTILKAFFDAN  502
1qi9a.pdb             381  RVAAINAAQNP-N----NEVTYLLPQAIQEGSPTHPSYPSGHATQNGAFATVLKALIGLD  435
                             A  N  QN            LLP A  EGSP HPSY SGHA   GA  T LKA     

1qhba.pdb             503  F---QIDQVFEVDTDEDKLVKSSFPGPLTVAGELNKLADNVAIGRNMAGVHYFSDQFESL  559
1qi9a.pdb             436  RGGDCYPDPVYPDDDGLKLIDF-RGSCLTFEGEINKLAVNVAFGRQMLGIHYRFDGIQGL  494
                                       D D  KL        LT  GE NKLA NVA GR M G HY  D    L

1qhba.pdb             560  LLGEQIAIGILEEQSLTYGENFFFNLPKFDGTTIQI------------------------  595
1qi9a.pdb             495  LLGETITVRTLHQELMTFAEESTFEFRLFTGEVIKLFQDGTFTIDGFKCPGLVYTGVENC  554
                           LLGE I    L     T  E   F    F G  I                          

1qhba.pdb                  -     
1qi9a.pdb             555  V  555
                            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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