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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:39:21 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Nitrophorin.html
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#====================================
# Aligned_structures: 2
#   1: 1erxa.pdb
#   2: 1euoa.pdb
#
# Length:        193
# Identity:       77/193 ( 39.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     77/193 ( 39.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           22/193 ( 11.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1erxa.pdb               1  ---ACTKNAIAQTGFNKDKYFNGDVWYVTDYLDLEPDDV-P-KRYCAALAAGTASG---K   52
1euoa.pdb               1  MDCSTN--ISPKQGLDKAKYFS-GKWYVTHFLDKDP---QVTDQYCSSFTPRE---SDGT   51
                                        G  K KYF    WYVT  LD  P        YC              

1erxa.pdb              53  LKEALYHYDPKTQDTFYDVSELQVES-LGKYTANFKKVDKNGNVKVAVTAGNYYTFTVMY  111
1euoa.pdb              52  VKEALYHYNANKKTSFYNIGEGKLESSGLQYTAKYKTVDKKKAVLKEADEKNSYTLTVLE  111
                            KEALYHY       FY   E   ES    YTA  K VDK   V       N YT TV  

1erxa.pdb             112  ADDSSALIHTCLHKGNKDLGDLYAVLNRNKDAAAGDKVKSAVSAATLEFSKFISTKENNC  171
1euoa.pdb             112  ADDSSALVHICLREGSKDLGDLYTVLTHQKDAEPSAKVKSAVTQAGLQLSQFVGTKDLGC  171
                           ADDSSAL H CL  G KDLGDLY VL   KDA    KVKSAV  A L  S F  TK   C

1erxa.pdb             172  AYDNDSLKSLLTK  184
1euoa.pdb             172  QYDDQFTSL----  180
                            YD          


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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