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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:41:06 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/NTP_transf_2_N2.html
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#====================================
# Aligned_structures: 2
#   1: 1f5aa.pdb
#   2: 1fa0a.pdb
#
# Length:        519
# Identity:      197/519 ( 38.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    197/519 ( 38.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           74/519 ( 14.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1f5aa.pdb               1  ----YGITSPISLAAPKETDCLLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEW   56
1fa0a.pdb               1  SQKVFGITGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRF   60
                                GIT P S          L   L   LK  G FE E E   R   L  L  L    

1f5aa.pdb              57  IREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRSDFFTSFYD  116
1fa0a.pdb              61  VYEVSKKKNMSDGMARDAGGKIFTYGSYRLGVHGPGSDIDTLVVVPKHVTREDFFTVFDS  120
                             E S  KN         GGKIFT GSYRLGVH  G DID L V P HV R DFFT F  

1f5aa.pdb             117  KLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDI  176
1fa0a.pdb             121  LLRERKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQPQVPLSLTLSDKNLLRNLDE  180
                            L    E      V  AFVP IK  F GI ID   ARL     P  L L D  LL NLD 

1f5aa.pdb             177  RCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWA-LVAR  235
1fa0a.pdb             181  KDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVAR  240
                              R LNG RVTDEIL LVP    FR  LRAIKLWA R   Y NI GF GGV WA LVAR

1f5aa.pdb             236  TCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHL-PI  294
1fa0a.pdb             241  ICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPV  300
                            CQLYPNA        FF   S W WP PV LK  E   L   VW P     DR H  P 

1f5aa.pdb             295  ITPAYPQQNSTYNVSVSTR-V-VEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYI  352
1fa0a.pdb             301  ITPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKKSWANLFEKNDFFFRYKFYL  360
                           ITPAYP    T N   ST  V   EF  G  IT  I   K  W  LFE   FF  YK Y 

1f5aa.pdb             353  VLLASAPT-EKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAKEEFR------  405
1fa0a.pdb             361  EITAYTRGSDEQHLKWSGLVESKVRLLVMKLEVLAGIKIAHPFTKPFES-----SYCCPT  415
                              A       Q L W GLVESK R LV  LE    I  AH     F             

1f5aa.pdb             406  --------------------------------T-WVIGLVFK--------DLTYDIQSFT  424
1fa0a.pdb             416  EDDYEMIQDKLKLVTDENKEEESIKDAPKAYLSTMYIGLDFNIENKKEKVDIHIPCTEFV  475
                                                               IGL F         D       F 

1f5aa.pdb             425  DTVYRQAI-NSKFEVD--KIA---AHVKRKQLH--QLLP  455
1fa0a.pdb             476  NLCRSFNEDYGD----HKVFNLALRFVKGYDLPDEVFD-  509
                                                     VK   L       


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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