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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 03:38:40 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/NTP_transf_2_2.html
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#====================================
# Aligned_structures: 3
#   1: 1f5aa.pdb
#   2: 1fa0a.pdb
#   3: 1fa0b.pdb
#
# Length:        190
# Identity:       32/190 ( 16.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    100/190 ( 52.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           90/190 ( 47.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1f5aa.pdb               1  PNFFQKYKHYIVL-LASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPA   59
1fa0a.pdb               1  NDFFFRYKFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEVLAGIKIAHPFTKPFES   60
1fa0b.pdb               1  NDFFFRYKFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEVLAGIKIAHPFTKPFES   60
                           ndFFfrYKfYlei aytrgsdeQhLkWsGLVESKvRlLVmkLEvlagIkiAHpftkpFes

1f5aa.pdb              60  KEEFR-----------------------------------------------T-WVIGLV   71
1fa0a.pdb              61  -----SYCCPTEDDYEMIQDKLKLVT------DENKEEE-SIKDA--PKAYLSTMYIGLD  106
1fa0b.pdb              61  -----SYCCPTEDDYEMIQDK-----YGSHKTETALNALKL----VTPKAYLSTMYIGLD  106
                                                                               s myIGLd

1f5aa.pdb              72  FK--------DLTYDIQSFTDTVYRQAINS----K---FEVDKIAAHVKRKQLHQLLP--  114
1fa0a.pdb             107  FNIENKKEKVDIHIPCTEFVNLCRSFN-E-DYGDHKVFNLAL---RFVKGYDLP----DE  157
1fa0b.pdb             107  FNK------VDIHIPCTEFVNLCRSFN-E-DYGDHKVFNLAL---RFVKGYDLP----DE  151
                           Fn        DihipcteFvnlcrsfn e     h   nlal   rfVKgydLp      

1f5aa.pdb                  ----------     
1fa0a.pdb             158  VFD-------  160
1fa0b.pdb             152  VFDENEKRPS  161
                                     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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