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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:27:01 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/MutS_D3.html
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#====================================
# Aligned_structures: 2
#   1: 1e3ma.pdb
#   2: 1ewqa.pdb
#
# Length:        304
# Identity:      106/304 ( 34.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    106/304 ( 34.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           43/304 ( 14.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1e3ma.pdb               1  DAATRRNLEITQNLAGGAE---NTLASVLDCTVTPGS---RLKRWLH-PVRDTRVLLERQ   53
1ewqa.pdb               1  -------------------RGQDTLFSVLDETRTAP-GRRLLQSWLRHPLLDRGPLEARL   40
                                                  TL SVLD T T       L  WL  P  D   L  R 

1e3ma.pdb              54  QTIGALQ--D-FTAGLQPVLRQVGDLERILARLALRTARPRDLAR-RHAFQQLPELRAQL  109
1ewqa.pdb              41  DRVEGFVREGALREGVRRLLYRLADLERLATRLELGRASPKDLGALRRSLQILPELRALL  100
                                         G    L    DLER   RL L  A P DL   R   Q LPELRA L

1e3ma.pdb             110  E-TVDSAPVQALREKGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADG  168
1ewqa.pdb             101  GEEVGL---------PDLSPLKEELEAALVEDPPLKVSEGGLIREGYDPDLDALRAAHRE  151
                              V                L   LE A    PP  V  GG I  GY   LD  RA    

1e3ma.pdb             169  ATDYLERLEVRERERTGLDTLKVGFNAVHGYYIQISRGQSHLAPINY-RRQTLKNAERYI  227
1ewqa.pdb             152  GVAYFLELEERERERTGIPTLKVGYNAVFGYYLEVTRPYYERVPKEYRPVQTLKDRQRYT  211
                              Y   LE RERERTG  TLKVG NAV GYY    R      P  Y   QTLK   RY 

1e3ma.pdb             228  IPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERA  287
1ewqa.pdb             212  LPE-KEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVA  270
                            PE KE E  V          E     E         EAL   A  LAELDV   LAE A

1e3ma.pdb             288  YTLN  291
1ewqa.pdb             271  VRYG  274
                               


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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